Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi390g00001 ATGGGATTGATTTGTGGTTGTGACTTTGTTGGTTGTGTTTTGATGTTTAGGAAAAGACAAACCCTTTTTTCTCTTTCAAATAGGTTGTTGGTGTTTCAGCTTCTTGTGCTGTTCTTGTTTTGTTTGCATCATGATAATAGAGTGCAATGTCATGGGAGATTGAGTAAACATGTATCTTATGAGTCTCGATCGGGGTCGGGGTCGGAATACAAGGATGATTCTAAGAAGATTATTGTTAGTGTAGTTTTAGGAGTGATCACTGGATTAATTGGTTCGATTCTGTTTGCGTTTGTGATTCGTTGTGTCGTTCGGTATCTGAATAGAACGCCTATCCTTAAAGGACCGGTGATATTCTCGCCGAAGATTGCCTCGAAGACACTCCAATTAGCTTTGTCGAAAGAAAACCATTTGCTCGGTTCGAGTGCGAATGGGAAGTACTACAAAACTGTTCTTGAGAATGGTCTCATAATTGCGGTGAAAAAGCTTACACCGTTCGAGAGCAATTCGCAAGAGAGTAGGAGAAAATCGGTGAAGAGGAAGATACAGATGGAGCTAGAGCTTCTTGCAAGCTTGAGACATAGGAATTTGATGAGTTTGAGGGCTTACGTTCGCGGAAACGATGGATTCTCGTTGGTTTATGATTATGTGTCGACCGGGAGTCTCGCGGATGTGATGAATAGGGTTAGGGAAAATGAGTTGCAGATTGGTTGGGAAGTTAGGTTGAGGATTGCTGTTGGTGTGGTGAAGGGTCTTCAATATCTTCATTACACTTGTGTGCCTCAGATTTTGCATTTCAATTTGAAGCCTACAAATGTGATGTTGGATGCTGAGTTTGAACCTAGATTGGCTGATTATGGTTTGGCTAAACTTCTACCAAACTTAGATAGAGGGAATTCTCTCAACACCCCTCCCGAATGTTTCCTGAATTCCAGGTACACAGAAAAAAGTGACATATTCAGTTTTGGGATGATACTAGGCGTTTTATTAACCGGTAAGGACCCTACGGATCCGTTCTTTGGAGAAGCGGAGAGAGGTGGAAGTTTGGGATGTTGGCTGCGACACTTGAAGCAAGCGGGCGAGGAACGAGAAGCTCTGGATAAGAGTATTTTGGGGGAACAAGGTGAAGAAGATGAGATGCTAATGGCTGTTGGGATTGCTGCTGCATGCTTATCTGATATGCCTGCTGATAGACCTTCAAGCGACGAACTTGTTCACATGCTAACACAGCTTAATAGTTTTTGA 1242 0.4267 MGLICGCDFVGCVLMFRKRQTLFSLSNRLLVFQLLVLFLFCLHHDNRVQCHGRLSKHVSYESRSGSGSEYKDDSKKIIVSVVLGVITGLIGSILFAFVIRCVVRYLNRTPILKGPVIFSPKIASKTLQLALSKENHLLGSSANGKYYKTVLENGLIIAVKKLTPFESNSQESRRKSVKRKIQMELELLASLRHRNLMSLRAYVRGNDGFSLVYDYVSTGSLADVMNRVRENELQIGWEVRLRIAVGVVKGLQYLHYTCVPQILHFNLKPTNVMLDAEFEPRLADYGLAKLLPNLDRGNSLNTPPECFLNSRYTEKSDIFSFGMILGVLLTGKDPTDPFFGEAERGGSLGCWLRHLKQAGEEREALDKSILGEQGEEDEMLMAVGIAAACLSDMPADRPSSDELVHMLTQLNSF 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi390g00001 413 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 216 412 - -
Vivi390g00001 413 ProSiteProfiles Protein kinase domain profile. 132 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi390g00001 413 Gene3D Transferase(Phosphotransferase) domain 1 216 412 - -
Vivi390g00001 413 SUPERFAMILY Protein kinase-like (PK-like) 135 408 IPR011009 -
Vivi390g00001 413 Gene3D Phosphorylase Kinase; domain 1 119 215 - -
Vivi390g00001 413 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 33 409 - -
Vivi390g00001 413 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 124 215 - -
Vivi390g00001 413 Pfam Protein kinase domain 134 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi390g00001 78 410 Receptor kinase-like Gene Family AT2G31880 34.831 4.23e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Vivi390g00001 Pkinase 9.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi390g00001 - - gmx:102664273 624.78