Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi38g00078 ATGGCGGCGGCGCGCCGGCTCCGTGAGCTTCAATCAGAAGCCTCCAACAAGATCTGCGTCGACTGTTCCCAAAAGAATCCCCAATGGGCCTCCGTCTCCTACGGCGTCTTCATGTGTCTAGAATGCTCCGGCAAACACCGCGGCCTCGGCGTTCACATCTCCTTCGTCCGATCCGTAACAATGGACTCATGGTCTGATCTCCAGATCAAGAAAATGGAAGCCGGTGGTAACCGCAATCTCAATTCGTTTCTCTCTCAATACGGAATTCCCAAGGAAACGGATATTATAACTAAGTATAATTCCAACGCTGCTTCGATCTACCGCGATCGGATTCAGGCTCTTGCTGAAGGTCGGTCGTGGCGCGATCCGCCGGTTGTTAAGGAGAATGCTAATACTAATACTCGATCTGGTAATGGTAAGGGAAAGCCGCCTCTGGCTGCTGGTTCTAATGGAGGAGGTTGGGATGATAATTGGGGTAATGATAATGATAATGATGGTGGTTATGGATCTCGCGGCGGTGGTGATTTTAGGAGGAATCAGTCTACTGGTGATGTTATGGGGTTTGGTGGAGGCGGAATTGCGCCGTCGCCGAGGTCGAAGTCGACGGAGGATATTTATACCAGGACGCAATTGGAGGCTTCTGCTGCTAATAAGGAAGGGTTTTTCGCGAAGAAGATGGCGGAGAATGGTGCGAGACCGGAGGGGCTTCCTCCGTCGCAGGGTGGGAAGTATGTAGGATTTGGATCTAGTCCCACTCCTGCTCAGAGGATGGGTCCTCAAAGTGATTATTTATCTGTTGTTTCTGAGGGAATAGGTAAATTGTCGATGGTTGCTCAGTCTGCAACCAAGGAAATCACTGCCAAGGTGAAGGACGGTGGTTATGATCACAAGGTCAATGAAACTGTCAATATTGTAACTCAGAAGACATCGGAAATTGGACAAAGGACATGGGGTATAATGAAAGGGGTCATGGCATTGGCCTCACAAAAAGTTGAGGAGTTTGCCAAAGATTACCCGAATGAGAATTCTGATAACTGGCAGCGAAATGAGAATAATAGGCATGATTTCAATCAAGAGAATAGAGGCTGGAATTCTTCTACCAGAGAAGGACAACCTTCATCAGGTGGACAAACTAATACTTATCACTCAAGCTCAAACTCGTGGGATGATTGGGACAGCCAAGATACAAGGAAGGAAGTACAACCAGCTAAAGGATCAGCTCCCCGTAAAAATGATGATTGGGCTGGCTGGGATGATGCCAAAGATGATGATGGATTTGATGATAAATCTTATGGTCATAATGGGACGTCAGGTTCTGCCTGGACAGGAGGAGGCTTTCACTAA 1344 0.4799 MAAARRLRELQSEASNKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSDLQIKKMEAGGNRNLNSFLSQYGIPKETDIITKYNSNAASIYRDRIQALAEGRSWRDPPVVKENANTNTRSGNGKGKPPLAAGSNGGGWDDNWGNDNDNDGGYGSRGGGDFRRNQSTGDVMGFGGGGIAPSPRSKSTEDIYTRTQLEASAANKEGFFAKKMAENGARPEGLPPSQGGKYVGFGSSPTPAQRMGPQSDYLSVVSEGIGKLSMVAQSATKEITAKVKDGGYDHKVNETVNIVTQKTSEIGQRTWGIMKGVMALASQKVEEFAKDYPNENSDNWQRNENNRHDFNQENRGWNSSTREGQPSSGGQTNTYHSSSNSWDDWDSQDTRKEVQPAKGSAPRKNDDWAGWDDAKDDDGFDDKSYGHNGTSGSAWTGGGFH 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi38g00078 447 Pfam Putative GTPase activating protein for Arf 5 105 IPR001164 GO:0005096
Vivi38g00078 447 Gene3D Arf GTPase activating protein 1 134 IPR038508 -
Vivi38g00078 447 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 447 IPR044519 GO:0005096|GO:0016192
Vivi38g00078 447 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Vivi38g00078 447 MobiDBLite consensus disorder prediction 229 260 - -
Vivi38g00078 447 MobiDBLite consensus disorder prediction 119 203 - -
Vivi38g00078 447 MobiDBLite consensus disorder prediction 358 390 - -
Vivi38g00078 447 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Vivi38g00078 447 SUPERFAMILY ArfGap/RecO-like zinc finger 5 116 IPR037278 -
Vivi38g00078 447 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Vivi38g00078 447 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Vivi38g00078 447 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Vivi38g00078 447 CDD ArfGap_ArfGap1 3 117 - -
Vivi38g00078 447 MobiDBLite consensus disorder prediction 391 430 - -
Vivi38g00078 447 MobiDBLite consensus disorder prediction 339 447 - -
Vivi38g00078 447 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi38g00078 5 91 C2H2 Transcription Factor Family AT4G21160 48.864 1.86e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi38g00078 K12492 - gmx:100778302 595.119