Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi38g00061 ATGGATCCTAGGAAACCCTTCATTGCAGGTGATGATATCATGGAGCTGCAATGGCAAAACGGTCGAGTTGTCACACAGAATCAAAACCACCGTAATGTCAACCAACCACAGCCGGTGAGAAACTCCGACGACTCCACTCGCGGTGGAAGTACTTCATTGCCGAGGGAGAATCAATATCTCTTCATGCATGAAGGAGAAATGGCTTCGGTGCAGCATTATGCTAACGCTACCATGCAAGGTCCACCAATGAGGTCTGAGCCGGTGCCTCCGAACTTTGCATTCTTTGCTAGGCAAGGCGTTAGAGCTGAACCAGAACCCGCTGAACCAGAACCAGCTGAACCAGAACCAGCTGAATCGGAATCGGAACCAGCTGAATCGGAGTCGGAACCAGCTGAATCTGAACCGTTAACTGATACAGAATCATTAGTAGATTCTTCTGATTCATCATCTGTGATGCCAATGGCGGTATCCGAAACAGAGGGAGAAGAAAGCTGCTTGACGGCACCTTCGACAATGTCTGAAGAAACTGATGGTTGGAGTGATTGGAGTAGCGATGAGGAACAACCCGTTCTGAGGCGAAGTGACGCGCAGGAATGGAACCATCAAAGGAAGAGGCGCCGTAATGAAATTAATGAAAAGATGAGAGTTTTGCAACAACTTCTACCTCGATCTAATAACAAGTCTGATGAAGAGTCTATGCTCGATGCGGCAATTCAATACACGAAGTCACTGCAGTTACAAGTTCAGTTTATGCAGATGATGTCCATGAGATATGGCACGGTATCTATGATGTTTCCTGCAATCCAGCAGTATATGCGGCCACCAATTGGTATGGGAATGAACATGCCAGTAATGTCATTTCCCAATATGTTTCCTAGTTCTACTTCGTCTCTGAATTTTGGACCAAGGTTCTCTATGCCTTCTGTCCACATGCCGCGTGTTTCTACACCTGGTTCATTCATAATTCCAGCAACAAATCCGGCAAATAATAACATGTCCACCTCAGTTGGAACATATAATTCAAATCATCTAGGTATCCCAAATTTTACTGATCCTTATCAACAGTACATGGGAGCCTACCAGATGCAGTCTCAATTAATGCAGAATCAGGCAATGAACCAAACAAATGTCAGCAAGTTCGAAAGTGGCCGCCAGTCAGGAGATAAATGA 1170 0.4547 MDPRKPFIAGDDIMELQWQNGRVVTQNQNHRNVNQPQPVRNSDDSTRGGSTSLPRENQYLFMHEGEMASVQHYANATMQGPPMRSEPVPPNFAFFARQGVRAEPEPAEPEPAEPEPAESESEPAESESEPAESEPLTDTESLVDSSDSSSVMPMAVSETEGEESCLTAPSTMSEETDGWSDWSSDEEQPVLRRSDAQEWNHQRKRRRNEINEKMRVLQQLLPRSNNKSDEESMLDAAIQYTKSLQLQVQFMQMMSMRYGTVSMMFPAIQQYMRPPIGMGMNMPVMSFPNMFPSSTSSLNFGPRFSMPSVHMPRVSTPGSFIIPATNPANNNMSTSVGTYNSNHLGIPNFTDPYQQYMGAYQMQSQLMQNQAMNQTNVSKFESGRQSGDK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi38g00061 389 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 14 379 IPR031066 -
Vivi38g00061 389 MobiDBLite consensus disorder prediction 186 206 - -
Vivi38g00061 389 MobiDBLite consensus disorder prediction 21 53 - -
Vivi38g00061 389 MobiDBLite consensus disorder prediction 109 134 - -
Vivi38g00061 389 MobiDBLite consensus disorder prediction 101 206 - -
Vivi38g00061 389 Pfam Helix-loop-helix DNA-binding domain 202 245 IPR011598 GO:0046983
Vivi38g00061 389 Gene3D - 192 255 IPR036638 GO:0046983
Vivi38g00061 389 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 244 IPR011598 GO:0046983
Vivi38g00061 389 SMART finulus 200 250 IPR011598 GO:0046983
Vivi38g00061 389 MobiDBLite consensus disorder prediction 138 155 - -
Vivi38g00061 389 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 262 IPR036638 GO:0046983
Vivi38g00061 389 MobiDBLite consensus disorder prediction 163 178 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi38g00061 3 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 29.375 3.00e-19 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi38g00061 HLH 1.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi38g00061 - - vvo:131610058 699.508