Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi38g00059 ATGGATCAACAAGGGTTACTGCGCCCTAAGAAACCCTTCATTGCAGACGATGAGATCATAGAGCTACTATGGCAAAACGGTCAAGTTGTCACGCAGACTCAAAACCACCGCCATATCAACAAACCACCGCCGGTGACAAACTCTGACGACTCCACTCCCGGCGGAAGGGAGAATCAACATCTCTTCATGCAAGAAGGAGAAATGGCTTCGTGGCTTCATTATCCTAATGATGATGATGATTCTCCTATCGATCCATCTTTCTGCGCCGATTTTACCATGATTACTCCACAACGGAGGTCCGAGCAGGTGCCTCCGAACTTCGCATACTTTGTGAGGCACGGTGTTAGAGCTGAACCAGAACCGTTGTCTAGAAGGGAATCAACAATAGTAGATTCGTGTGACACGCCGGCTGTGATGCTAACGGCGGTATCGGAGACGCTAAGAAGCTCAGCTGAGCCAACAGAAGGAGAAACTGGCTTGACGGCGCCTTCAACGACGTTTGACGAACCAGATGGTTCGAGTAGCGATGTAGAACCGGTTCGGGAGGTAGCGGAACGGGACCGGAAGCGGAAGGGAAGGGAGGAAGAGGAATGGAAGTATCAAAACGAGGATATTGATTTTGAATATGTGGAAGCCAAAAATAAAACCAGTGGAACATCAACAAAGAGATCTCGTGCTGCTGAGGTCCATAGTCTCTCAGAGAGGAGGCGCCGTGATCGGATTAATGAAAAGATGAAAGCTCTGCAAGAACTTATACCTCGATCTAATAAGTCTGACAAAGCGTCTATGCTGGATGAGGCAATTGAGTACTTGAAGTCACTGCAGTTACAAGTTCAGAGAATACAACATATGCAGATGATGTCCATGGGATGTGGCATGGTACCAATGATGTTTCCTGGAATCCAGCAGTGTATGCCATCAATTGGAATGGGAATAAACAGGCCAGTAATGCCGTTTCCCAATATGTTTTCTGGTTCTGTTTTGCCTGCAAATTTTGGACCAAGGTTCACAATACCTCCTTTCCACACGCCGCATGTTCCTACACCTGATTCATTCACAATGCCAGCAGCAAATCTGGTAGATAATAACATGCCCACATCAGTTGGAACACATGATTCAAATAAGTCATGTATCCCAAACGTCACTGATCCTTATCCACAATATCTTGGACCCCACCAGACGCAGTTTCAGTTAATGCAGAATCAGACAATGAACCAACCAAATGCCAGCAAGTTAGAAAGCCGCCAGTCAGGTGTAGGAACATGCGGCGTGTGGAAAGGAGGCATTGCGAACCTTGGTCCAAAATTTGCAAGCAATGCAGAACCAGAAAACACATTAGGAAACGACATTACTGGCATGTTTATTCCCATTCCAATTGGTGTCCATATACTGTTGTATTTCGGGAAACATCATAGGTACCATGCCACATCCCATGGACATCATCTGCATAACTTGTACGTTATGTTTAAGAAATGA 1476 0.46 MDQQGLLRPKKPFIADDEIIELLWQNGQVVTQTQNHRHINKPPPVTNSDDSTPGGRENQHLFMQEGEMASWLHYPNDDDDSPIDPSFCADFTMITPQRRSEQVPPNFAYFVRHGVRAEPEPLSRRESTIVDSCDTPAVMLTAVSETLRSSAEPTEGETGLTAPSTTFDEPDGSSSDVEPVREVAERDRKRKGREEEEWKYQNEDIDFEYVEAKNKTSGTSTKRSRAAEVHSLSERRRRDRINEKMKALQELIPRSNKSDKASMLDEAIEYLKSLQLQVQRIQHMQMMSMGCGMVPMMFPGIQQCMPSIGMGINRPVMPFPNMFSGSVLPANFGPRFTIPPFHTPHVPTPDSFTMPAANLVDNNMPTSVGTHDSNKSCIPNVTDPYPQYLGPHQTQFQLMQNQTMNQPNASKLESRQSGVGTCGVWKGGIANLGPKFASNAEPENTLGNDITGMFIPIPIGVHILLYFGKHHRYHATSHGHHLHNLYVMFKK 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi38g00059 491 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 20 410 IPR031066 -
Vivi38g00059 491 MobiDBLite consensus disorder prediction 146 197 - -
Vivi38g00059 491 MobiDBLite consensus disorder prediction 214 235 - -
Vivi38g00059 491 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 223 284 IPR036638 GO:0046983
Vivi38g00059 491 Gene3D - 220 287 IPR036638 GO:0046983
Vivi38g00059 491 MobiDBLite consensus disorder prediction 146 172 - -
Vivi38g00059 491 SMART finulus 231 280 IPR011598 GO:0046983
Vivi38g00059 491 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 225 274 IPR011598 GO:0046983
Vivi38g00059 491 Pfam Helix-loop-helix DNA-binding domain 229 275 IPR011598 GO:0046983
Vivi38g00059 491 MobiDBLite consensus disorder prediction 33 58 - -
Vivi38g00059 491 FunFam Basic helix-loop-helix transcription factor 220 286 - -
Vivi38g00059 491 CDD bHLH_AtPIF_like 225 294 IPR047265 -
Vivi38g00059 491 MobiDBLite consensus disorder prediction 174 197 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi38g00059 16 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.271 9.63e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi38g00059 HLH 1.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi38g00059 - - tpra:123888958 544.658