Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi38g00055 ATGACATCACTTGAAAACTTTACATCCAAGTTAACAGCACTTGTTGTAGATGACACTGATCTCATTCGAAAAATTCATCAAAAAATGTTGAATAGTTTAGGAGTGAAAAGTGAAGGTGCGAAAAATGGAAAAGAAGCACTTGAAATTCATAGCTATGGCAAAAAATTTGACCTAATTCTCATGGATAAAGATATGCCTATCATGAATGGCCTTGAGGCAACAAAGGAACTTCGTGCAAGGGGAATTTGTAGCACTATTGTTGGAGTGTCATCACATTCAATGGAAGAGGAAATAGTCAAGTTTATGGAAGCGGGACTAGATGAGTATCAAGAGAAGCCTTTGAACAAAGTGAAACTTAGTTCTATTCTTGACAAGATCAAACACAATCTCATGTCCAATTGA 402 0.3607 MTSLENFTSKLTALVVDDTDLIRKIHQKMLNSLGVKSEGAKNGKEALEIHSYGKKFDLILMDKDMPIMNGLEATKELRARGICSTIVGVSSHSMEEEIVKFMEAGLDEYQEKPLNKVKLSSILDKIKHNLMSN 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi38g00055 133 SMART REC_2 11 123 IPR001789 GO:0000160
Vivi38g00055 133 SUPERFAMILY CheY-like 10 126 IPR011006 -
Vivi38g00055 133 CDD REC_hyHK_CKI1_RcsC-like 14 123 - -
Vivi38g00055 133 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 129 - -
Vivi38g00055 133 ProSiteProfiles Response regulatory domain profile. 12 127 IPR001789 GO:0000160
Vivi38g00055 133 Pfam Response regulator receiver domain 14 122 IPR001789 GO:0000160
Vivi38g00055 133 Gene3D - 1 132 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi38g00055 11 123 Response Regulator Gene Family AT3G04280 46.087 9.99e-27 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi38g00055 Response_reg 5.3e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi38g00055 - - vvo:131612427 252.292