Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi38g00017 ATGCTGCAGGCTACCGGAGAATATTATTCTGTTGAACCAGCTGATTCCAAGAGGCCTTTACGTGCTCTCCTTGATGTTGGTTTGCTCAAAACCACAATCAGTAACCGGGTGTTTGGGGAACTCAAGGGAGCTTTGGATATTCCTCACAGTGACACAAGGTTTGCTGGTTTTGACAAGGAGAAAAAGAAACTTGATGCTGAGATTCATTGGAAGTACATATTTAGTGGACATGTTACTGCCTATATGAAGACATTGATTGAAGATGAACCAGAAAAATATCAAACTCACTTCAGTCAATATATCAAGAAAGGGATAGAAGCTGACGAAATTGAGGAACTTTGCAAGAAGGTTCATGTTGTTATTCGTGCAGACCCATCAATCAAACAGTTTTGGAATCAGCCACTAATGGAACACGAGATTTTTACTTTAACTTATAAATCATGGATATCACAAGTTCTACATGAGCTAAATGAGATGAAGCAACAATGA 489 0.3885 MLQATGEYYSVEPADSKRPLRALLDVGLLKTTISNRVFGELKGALDIPHSDTRFAGFDKEKKKLDAEIHWKYIFSGHVTAYMKTLIEDEPEKYQTHFSQYIKKGIEADEIEELCKKVHVVIRADPSIKQFWNQPLMEHEIFTLTYKSWISQVLHELNEMKQQ 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi38g00017 162 Gene3D - 1 156 - -
Vivi38g00017 162 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 3 47 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vivi38g00017 162 SUPERFAMILY Translational machinery components 14 127 - -
Vivi38g00017 162 PANTHER RIBOSOMAL PROTEIN L5-RELATED 2 129 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vivi38g00017 162 PRINTS Ribosomal protein L5 signature 39 58 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vivi38g00017 162 PRINTS Ribosomal protein L5 signature 81 101 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi38g00017 2 143 Cytoplasmic Ribosomal Protein Gene Family AT3G25520 65.068 1.81e-63 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi38g00017 K02932 - dcr:108196794 209.92