Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi38g00002 ATGAAAATGCAAATGAAAACACAGTTTTTCATTTTCTTCTGTTACAGTATCTTTTTTCCTTTCTCTTACAGTTTTTCTTCTGCTACGAAGAATGATGAACTATTGGCTTTGCTTTCGATAAAATCGGGTCTTATTGATCCCTTGAATACTCTTCATGATTGGAAGTTGGATTCACCTCATTGTAACTGGACTGGAATCAAATGCAACTCAGCCGGAACCGTAGAGAATCTCGATCTCTCTCACAAGAATCTCAGTGGTATAGTATCCAATGACATACAAAGGCTTCAGTCTCTTACTTCTCTAAACTTATGTTGCAATGCATTTTCATCAAAATTACCAAAATCTATATCCAATCTCACCACACTGAACATTCTTGATGTAAGTCAGAATTTCTTCATTGGTGAGTTTCCATTAGGACTTGGAAAAGCGTCGAGATTAACATCGTTAAATGGCTCGAGCAATGAATTCTCAGGTACAATTCCTTTGGACCTTGGAAATGCAACTTTGTTGGAAATGCTTGATCTTAGAGGCAGTTTCTTTGAAGGTTCAATTCCGAAATCATTTGGTAACTTGCATGGGTTGAAGTTTCTTGGTTTATCTGGGAATAATCTCACTGGAAAAATTCCTGGTGAGCTTGGAAAAATTTCATCATTGGAGTATATGATTCTCGGATATAACGGATTCGAAGGTGAGATTCCATTCGAATTCGGAAATCTCACTAGTCTTAAGTATCTTGATTTAGCAGTTTCCAATCTTGGTGGTGAGATTCCACGTGAATTGGGAAATCTCAAGCTATTGAATACACTTTTCTTATACAACAACAATTTTGAAGGAAGAGTTCCATCACAAATTGGTAACATGACTTCTTTGCAGTTTTTCGATCTTTCTGATAACACTTTGTCAGGAAAAATTCCAGATGAAATAGGTCTGCTGAAGAGTTTGAAGCTTTTGAACTTCATGGGAAACCAGTTATCTGGTTTTGTTCCTTCTGGCATTGGGAATTTGCCTCAATTGGAGGTTCTTGAGCTATGGAACAATTCATTATCAGGTCCATTACCGAGCAACCTTGGCGAAAATTCACCGTTGCAATGGTTGGATGTATCGTCCAATTTGATCTCTGGAGATATTCCTGAAACTCTTTGCAGCCAGGGAAATCTCACCAAGCTAATACTTTTCAACAATGCTTTCTCTGGTCCGATTCCATCGAGCTTATCAAAATGTTCTTCGCTTGTTCGTGTTCGAATCCACAACAATCTTCTTTCTGGATCAGTTCCTGTTGGTCTTGGCAAACTTGAGAAGCTTCAAAGGTTAGAATTAGCTAACAATAGTCTCACTGGTGAAATTCCAGATGATATTCCTTCTTCAACATCTCTTTCTTTCATTGATCTCTCAAGAAACAAACTCCATTCTTCTCTATCTTCTACTATTCTCTCCATTCCAAATCTCCAAGTTTTCATGGTCTCCCACAACAACTTAGAAGGTAAAATACCAAACCAATTTCAGGATTCTCCCTCACTTACTGTTCTTGATCTCTCGTCGAATCATTTATCCGGAGCCATTCCAGAAAGCATAGGTTCATGTCAAAAGCTAGTAAATTTGAACCTGCAAAACAACCTTTTGATTGGTGAAATCCCAAAAGCACTAGCTAACATGCCTACAATGGCTATGCTTGATCTTTCCAACAACTCGTTGACCGGTCATATACCTGAGAACTTTGGTTTATCGCCAGCTTTGGAAGCATTTAATGTTTCATACAACAAGCTTGAAGGTTCTGTGCCAGATAATGGTATGCTAAGAACTATAAACCCGAACAATCTCGTTGGAAATGCTGGCCTATGTGGTGGAATCCTCCCTTCATGTGACCAAAACTCGGCATACTCCTCAAGATATGGAAGTTCACATGCAAAGCATATTATCACAGGGTGGATCATTGGAATATCATCAATTCTAGCCATTGGAATTACAATCTTGTTAGCAAGATCTTTATATGTAAGGTGGTACACCGGTGGATTTTGCTTCAAAGAGAGATTTTATAAAGGTAGCAAAGGGTGGCCATGGCGATTAATAGCATTTCAGAGACTTGGTTTTACAAGTACTGACATTCTAGCTTGCATCAAGGAAACAAATGTGATCGGAATGGGAGCTACCGGCGTTGTTTACAAAGCCGAGGTACCGCAATCCAATACAATTGTAGCAGTGAAAAAGCTGTGGAGATCAGGAAATGATGTTGAAGTAGGAAGAGGCAGCGATGAGCTTGTTGGAGAAGTGAACCTCTTAGGGAGACTAAGACACAGGAACATTGTTAGACTATTAGGATTTCTTCACAATGACACTGATTTGATGATAGTTTATGAATTTATGCATAATGGAAACCTAGGAGATGCCTTGCATAGTAAGCAAGCTGTTCGACAGCTTGTTGACTGGGTTTCAAGATATAACATAGCTCTTGGAGTTGCTCAAGGACTTGCTTATCTTCATCACGACTGTTATCCGCCGGTTATCCATCGCGACATTAAGTCAAATAACATACTGCTTGATGCAAATCTTGAAGCAAGGATAGCAGATTTTGGTTTAGCCAAGATGATGATCCGGAAGAACGAAACCGTCTCCATGGTTGCCGGATCCTATGGCTACATTGCTCCTGAATATGGATATGCATTGAAGGTGGATGAAAAGATTGATGTATACAGTTATGGAGTAGTTTTGTTGGAGCTTGTGACAGGAAAGAGGCCATTAGACGCGGAATTTGGAGAGAGTGTAGACATTGTAGAGTGGCTTAGAAGGAAGATTAGAGACAAGAAATCTCTAGAAGAAGCATTAGATCCAAGTGTAGGAAACTGCAGGCATGTTATAGAAGAAATGCTTTTAGTTTTAAGAATAGCAGTAGTTTGCACTGCTAAACTTCCTAAAGACAGACCAAGCATGAGGGATGTGATAATGATGCTTGGAGAAGCAAAGCCTAGAAGAAAGATTAGTGGAAACAGTGAAACATCTTTAGCAGCTAACAACAATAACAAGGAGATGTCAGTTTTTAGTACATCACCAGTTAGTGGTCTTCTCTAG 3063 0.3918 MKMQMKTQFFIFFCYSIFFPFSYSFSSATKNDELLALLSIKSGLIDPLNTLHDWKLDSPHCNWTGIKCNSAGTVENLDLSHKNLSGIVSNDIQRLQSLTSLNLCCNAFSSKLPKSISNLTTLNILDVSQNFFIGEFPLGLGKASRLTSLNGSSNEFSGTIPLDLGNATLLEMLDLRGSFFEGSIPKSFGNLHGLKFLGLSGNNLTGKIPGELGKISSLEYMILGYNGFEGEIPFEFGNLTSLKYLDLAVSNLGGEIPRELGNLKLLNTLFLYNNNFEGRVPSQIGNMTSLQFFDLSDNTLSGKIPDEIGLLKSLKLLNFMGNQLSGFVPSGIGNLPQLEVLELWNNSLSGPLPSNLGENSPLQWLDVSSNLISGDIPETLCSQGNLTKLILFNNAFSGPIPSSLSKCSSLVRVRIHNNLLSGSVPVGLGKLEKLQRLELANNSLTGEIPDDIPSSTSLSFIDLSRNKLHSSLSSTILSIPNLQVFMVSHNNLEGKIPNQFQDSPSLTVLDLSSNHLSGAIPESIGSCQKLVNLNLQNNLLIGEIPKALANMPTMAMLDLSNNSLTGHIPENFGLSPALEAFNVSYNKLEGSVPDNGMLRTINPNNLVGNAGLCGGILPSCDQNSAYSSRYGSSHAKHIITGWIIGISSILAIGITILLARSLYVRWYTGGFCFKERFYKGSKGWPWRLIAFQRLGFTSTDILACIKETNVIGMGATGVVYKAEVPQSNTIVAVKKLWRSGNDVEVGRGSDELVGEVNLLGRLRHRNIVRLLGFLHNDTDLMIVYEFMHNGNLGDALHSKQAVRQLVDWVSRYNIALGVAQGLAYLHHDCYPPVIHRDIKSNNILLDANLEARIADFGLAKMMIRKNETVSMVAGSYGYIAPEYGYALKVDEKIDVYSYGVVLLELVTGKRPLDAEFGESVDIVEWLRRKIRDKKSLEEALDPSVGNCRHVIEEMLLVLRIAVVCTAKLPKDRPSMRDVIMMLGEAKPRRKISGNSETSLAANNNNKEMSVFSTSPVSGLL 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi38g00002 1020 Gene3D Ribonuclease Inhibitor 280 376 IPR032675 -
Vivi38g00002 1020 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 179 279 - -
Vivi38g00002 1020 FunFam MDIS1-interacting receptor like kinase 1 705 790 - -
Vivi38g00002 1020 FunFam MDIS1-interacting receptor like kinase 1 791 1001 - -
Vivi38g00002 1020 SUPERFAMILY L domain-like 56 323 - -
Vivi38g00002 1020 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Vivi38g00002 1020 SUPERFAMILY RNI-like 256 597 - -
Vivi38g00002 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
Vivi38g00002 1020 Gene3D Ribonuclease Inhibitor 177 279 IPR032675 -
Vivi38g00002 1020 Gene3D Ribonuclease Inhibitor 29 176 IPR032675 -
Vivi38g00002 1020 Pfam Leucine rich repeat 170 227 IPR001611 GO:0005515
Vivi38g00002 1020 Pfam Leucine rich repeat 457 516 IPR001611 GO:0005515
Vivi38g00002 1020 Pfam Leucine rich repeat 529 588 IPR001611 GO:0005515
Vivi38g00002 1020 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 194 983 - -
Vivi38g00002 1020 FunFam Leucine-rich repeat receptor protein kinase EMS1 280 362 - -
Vivi38g00002 1020 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 30 178 - -
Vivi38g00002 1020 Gene3D Ribonuclease Inhibitor 377 624 IPR032675 -
Vivi38g00002 1020 ProSiteProfiles Protein kinase domain profile. 705 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi38g00002 1020 Pfam Protein kinase domain 707 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi38g00002 1020 SMART LRR_typ_2 551 574 IPR003591 -
Vivi38g00002 1020 SMART LRR_typ_2 335 359 IPR003591 -
Vivi38g00002 1020 SMART LRR_typ_2 431 455 IPR003591 -
Vivi38g00002 1020 SMART LRR_typ_2 504 527 IPR003591 -
Vivi38g00002 1020 SMART LRR_typ_2 479 502 IPR003591 -
Vivi38g00002 1020 SMART LRR_typ_2 191 215 IPR003591 -
Vivi38g00002 1020 SMART LRR_typ_2 95 119 IPR003591 -
Vivi38g00002 1020 SMART LRR_typ_2 239 263 IPR003591 -
Vivi38g00002 1020 SMART LRR_typ_2 287 311 IPR003591 -
Vivi38g00002 1020 SUPERFAMILY Protein kinase-like (PK-like) 702 982 IPR011009 -
Vivi38g00002 1020 Gene3D Phosphorylase Kinase; domain 1 697 786 - -
Vivi38g00002 1020 ProSitePatterns Protein kinases ATP-binding region signature. 711 735 IPR017441 GO:0005524
Vivi38g00002 1020 Gene3D Transferase(Phosphotransferase) domain 1 787 1008 - -
Vivi38g00002 1020 SMART serkin_6 705 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi38g00002 1020 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 363 624 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi38g00002 3 1020 Receptor kinase-like Gene Family AT1G08590 59.904 0.0 1184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi38g00002 Pkinase 7.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi38g00002 - - gmx:100811284 1616.28