Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi389g00016 ATGGAGGAGAAGCACCATTTGAACTTCACACAAAAAGCTGACGTGGCAGTAAAAACCGTTACAGATAAAACCGTTACACCCGAAAATTCAGCCGTGAATTCCGGAAACGTCCGTGGAGGAACGCGGCATCCGGTTTACCATGGTGTCCGGAAACGGCGGTGGGGGAAATGGGTGTCGGAAATTCGAGAGCCACGGAAGAAGTCGCGGATATGGCTAGGGTCTTTTCCGGCGCCGGAGATGGCGGCAAAGGCTTACGACGTTGCTGCGTACTGTTTGAAAGGTCGGAAGGCGCAGCTTAATTTTCCAGATGACGTGCACCGTCTTCCGTTGCTTCCTCCGCCGGATTTGTGTACGGCTAGAGATATTCAAGCAGCGGCAGCTAAAGCAGCTCGAATGATGGTTACGACGCCGGAGGATAGTAGCATTGATTCCGGTGGTGGTGGTGGTGATGATTTTTGGGGTGAGATTGAGTTGCCGGAGCTTGTGAAGGGAACGTGGTGGACTTACTCTGTTAACGTTGCAGCGGTGCCGGAGATTTAA 540 0.5259 MEEKHHLNFTQKADVAVKTVTDKTVTPENSAVNSGNVRGGTRHPVYHGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGRKAQLNFPDDVHRLPLLPPPDLCTARDIQAAAAKAARMMVTTPEDSSIDSGGGGGDDFWGEIELPELVKGTWWTYSVNVAAVPEI 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi389g00016 179 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Vivi389g00016 179 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Vivi389g00016 179 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Vivi389g00016 179 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Vivi389g00016 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 29 140 - -
Vivi389g00016 179 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
Vivi389g00016 179 SUPERFAMILY DNA-binding domain 45 104 IPR016177 GO:0003677
Vivi389g00016 179 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Vivi389g00016 179 PRINTS Ethylene responsive element binding protein signature 84 104 IPR001471 GO:0003700|GO:0006355
Vivi389g00016 179 FunFam Ethylene-responsive transcription factor 2 44 103 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi389g00016 11 162 AP2-EREBP Transcription Factor Family AT1G01250 60.759 5.59e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi389g00016 AP2 7.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi389g00016 K09286 - gmx:100802845 214.157