Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi389g00003 ATGGGAAGAGCTCCATGCTGTGCTAAAGTTGGCTTGCACAAAGGTCCATGGACTACTAAAGAAGATGCATTGCTCACAAAATATATTCAAGCACATGGTGAAGGTCTATGGAAATCACTTCCCAAAAAAGCTGGACTTCTTAGATGTGGAAAAAGTTGTAGGCTCAGATGGATGAATTATCTTCGACCGGATATAAAGAGAGGAAACATAACACAAGAAGAAGATGATCTCATAATAAGATTACATTCACTTCTCGGAAATAAATGGTCACTTATAGCCGGAAGATTACCAGGAAGAACAGACAACGAAATAAAGAACTACTGGAACACACATCTCCTCAAAAAGATGCAAAGAAATGATCAAACATGTGACGTTACAGATCATGAACAACAACAACAGGGAAAAACCAAGAAGAACAACAACGTAGGTGGCAACAAAAAGAAGAAAAATAATAACAAACAAAAGAAAAACGACAAGAAAAAAGGTAACAATAACGATTATCATCAAGAGGAAGAGAAAATTCAAGTTTATTTACCGAAACCTATTAGGATTAAGGCCTTAACTTTACCAAGAACAGATAGTGGTTCATTTACATTTGAGTCAAATTCATCATCTGGTAGCCAACAAAAACAAGGAACGGAACAAGTGATAAACAACAACGTTGTTCGTGTGGTTGGTGAGATTGGTGAAAATGACAGATTTGGGTTCTCTAGTGATGACCATGACTTGGTCAACGATATTGAATGCGAATCATATTTTGACACGTGTAATGATCGTGGAACACTAGAGAGACTCTATGATGAATATTTCCAGCTCTTGAATGTGGATGGTACCTGTAATTTCGAGTTTGATTCTTTAGCTGAATCAATCTTTCTTTGA 879 0.3663 MGRAPCCAKVGLHKGPWTTKEDALLTKYIQAHGEGLWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITQEEDDLIIRLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHLLKKMQRNDQTCDVTDHEQQQQGKTKKNNNVGGNKKKKNNNKQKKNDKKKGNNNDYHQEEEKIQVYLPKPIRIKALTLPRTDSGSFTFESNSSSGSQQKQGTEQVINNNVVRVVGEIGENDRFGFSSDDHDLVNDIECESYFDTCNDRGTLERLYDEYFQLLNVDGTCNFEFDSLAESIFL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi389g00003 292 Coils Coil 145 165 - -
Vivi389g00003 292 CDD SANT 16 61 IPR001005 -
Vivi389g00003 292 Gene3D - 71 112 - -
Vivi389g00003 292 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi389g00003 292 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi389g00003 292 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vivi389g00003 292 FunFam Myb transcription factor 11 67 - -
Vivi389g00003 292 MobiDBLite consensus disorder prediction 121 174 - -
Vivi389g00003 292 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi389g00003 292 MobiDBLite consensus disorder prediction 157 174 - -
Vivi389g00003 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi389g00003 292 CDD SANT 71 112 IPR001005 -
Vivi389g00003 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi389g00003 292 SMART sant 66 114 IPR001005 -
Vivi389g00003 292 SMART sant 13 63 IPR001005 -
Vivi389g00003 292 MobiDBLite consensus disorder prediction 195 214 - -
Vivi389g00003 292 Gene3D - 14 66 - -
Vivi389g00003 292 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi389g00003 292 MobiDBLite consensus disorder prediction 141 156 - -
Vivi389g00003 292 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 205 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi389g00003 1 140 MYB Transcription Factor Family AT4G38620 66.429 1.92e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi389g00003 Myb_DNA-binding 4.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi389g00003 K09422 - gmx:100101857 337.806