Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi384g00048 ATGCCTTTTGAAATAATGAATCAGAGGGGTGTTACTGCTTCATCTCACCTTTATGATGATGTTTCCTATGCTTCTGAGAAGAATATTGGATTACGGAAGCCAAAATCCATTCATGATGATTATGCACAAGGAAAGAGTGAAATTGCAGCTTCACCTGGAAGCATTTTGCATACTTCATCAACCCTTGAAAGAAATGCAAAAACAGGCTTGCCAATGTCACAGACTAGTCTATCTGGAGAAACTTCAGAAAACCTACACTTTGGTGGACAAGCTGGCATTGTAGATGCGCTGAAGGATTCAAAAGAATCGCTGAATTATCATCCGAGATCATGGTCTGATGTGCATAGGCAGCCAGCATCTAGCTCGTACGGTTTAATTGGCAACAAGATTGTCACCAATGCAGGCCCACGTGAAAGCAGTCTATTCTCAAGCTCACTCTCCGATATGTTTAGCCAAAAGTTGAGGTTGTTGGGAAATGGTGTTCTGTCTGATCAGAACATAACTGCTGGTCTTCTTCCCGAGGAAGAACCGTACAAATCTCTTGAAGAAATTGAGGCTGACACCATAGGGGATCTCCTTCCTGATGAAGATGATCTGTTTTCCGGTGTCAATGATGAATTAGGAAGCAGTGTTCCTGCCAGAGCAAATGATGATTTTGAAGATTTGTTCAGCAGTGGTGGAGGCATGGAGTTGGAAGGTGATGAACTTCTAGTTTCAGGAAAAAGAATCAATGGCTTGGATGGAGATCCTGCTTACTTTGGGGGTTCTAATGGCAAAAGTCCTTTTGGCGAACAATCTTCTAGAACACTTTTTGTTAGAAACGTTACTAGCAATGTTGAAGACTCGGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAGCCATTTATACTGCCTCCAAGCATCGTGGCTTTGTTATGGTTTCTTATTATGACCTAAGGGCAGCACAAAATGCAATGAAAGCACTTCAAAATAGGTCATTTAATTCTAGGAAACTGGATATACATTATTCAATTCCAAAGGGAAATGCTTCAGAGAAGGATATTGGCCATGGCACACTGATGATATCTGGTCTTGATCCATCTGTTTTAAAAGATGAACTAAAACATATTTTTGGGTTTTATGGAGAAATCAAAGAAATCTATGAATACTCAGAAATGAATCATATCAAATATATTGAATTTTATGATGTTCGAGGCGCAGAAGCTTCTCTTCGTTCATTGAATGGGATCTGCATTGCTGGGAAGCACATCAAGCTTGAACCTGGCCATCCTAAGATTGCAACATGTATGATGCAGCCATCTCAAAAGGGACCAGATGAACCTGATATTGGTCATAATCTCAATGACATCCTATTCTTAAGACAAAAGGGAGTGTCTTCTGGAGTTATTGCATCTGGTGGAAGCTTGGAAAATGGATATAATCAAAGATTTCATTCTCCATCACAGCTGCCTTTGAATGCTTTTATTGATGACAAAATTTTTCACAGTATTTCCAACACCACAAGAGGGGCATCTGCTGTTCCAAGATTCCACCCTCATTCTTTGCCTGAGTATTTTGATGGCCTGGCTAATGGTAGTCCTTACAATTTGTCAAACACCATTAAAATGGCCGCCAATATTGGAACTGGATCCACAGAAGCATCTGATGGCAGGCACATTCAGGGAATGAGCTCAACTGGGAACTTAGCAGATTTTAATGCCGGCGGAAATGGGAGTCTTCCCCATCACCACCAGCTTTATCATATGTGGAATGGCTCAAACTTGCGTCAGCAATCTCCATCAAATGCTGTGGTTTGGCAGAAAACACCATCTTTTGTTAATGGTGCTTGTGCTCCAGGTCTTCCACAGATGCCTAGTTTTGCCAGGTCACCGGCTCATGTTCTGAGGGCATCACATGTAGACCACCATGTTGGATCAGCACCAGTTGTTACAGGATCACCCTGGGAAAGACAACATTCTTACTTGGGAGAGTCTCCTGATGCTCCTGGTTTTAGATTGGGTTCTCTGGGAAATGCAGGTTTTCCTGGTAGCTGGCAGTTGCATCCTCCAGATCTTTCTAGCAACATGTTTTCTCATGTTCGTGGGAATGTTAACGATTTGACATCCAGTGTCGGGCAGGGTTCTCCTAAACAGTTGTCACATGTCTTCCCTGGGAGACTTCCCATGACTTCAATGTCAAAATTTGATTCCACTAATGAACGAATGAGAAACCTCTATCATCGCAGAAGTGAAGCAAACAATAACCATGCTGATAAGAAACAATTTGAACTCGACCTAGGCCGCATATTGCGCGGGGAAGACAACCGAACAACTCTTATGATAAAAAATATTCCTAACAAGTATACTTCAAAGATGCTTCTTACAGCCATAGATGAGAGTTGTCGGGGAGCTTATGATTTTCTGTATTTGCCAATTGATTTTAAGAACAAGTGTAATGTTGGCTATGCATTCATCAATATGATTGAGCCTGCCCAAATCGTTCCATTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAGGTAGCTGTGCTTGCATATGCTCGAATTCAAGGAAAATCTGCTCTTATCGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGTCGTCCTATTCTATTCCATACAGATGGTCCAAATGCTGGTGATCCGGAGCCTTTCCCCTTGGGTGCCAATATTAGAGTAAGGCCCGGAAAATTACGTAATAGCATCAACGAGGAAAACCGTATTCAAGGGAATTCTTCATCTTTGGCAAGTGCTGAGGAGTTTGCTAGCGGAATAGATTCTTCACCGAGTTCTTCAAGAGACACTGACTGA 2844 0.4184 MPFEIMNQRGVTASSHLYDDVSYASEKNIGLRKPKSIHDDYAQGKSEIAASPGSILHTSSTLERNAKTGLPMSQTSLSGETSENLHFGGQAGIVDALKDSKESLNYHPRSWSDVHRQPASSSYGLIGNKIVTNAGPRESSLFSSSLSDMFSQKLRLLGNGVLSDQNITAGLLPEEEPYKSLEEIEADTIGDLLPDEDDLFSGVNDELGSSVPARANDDFEDLFSSGGGMELEGDELLVSGKRINGLDGDPAYFGGSNGKSPFGEQSSRTLFVRNVTSNVEDSELKALFEQYGDIRAIYTASKHRGFVMVSYYDLRAAQNAMKALQNRSFNSRKLDIHYSIPKGNASEKDIGHGTLMISGLDPSVLKDELKHIFGFYGEIKEIYEYSEMNHIKYIEFYDVRGAEASLRSLNGICIAGKHIKLEPGHPKIATCMMQPSQKGPDEPDIGHNLNDILFLRQKGVSSGVIASGGSLENGYNQRFHSPSQLPLNAFIDDKIFHSISNTTRGASAVPRFHPHSLPEYFDGLANGSPYNLSNTIKMAANIGTGSTEASDGRHIQGMSSTGNLADFNAGGNGSLPHHHQLYHMWNGSNLRQQSPSNAVVWQKTPSFVNGACAPGLPQMPSFARSPAHVLRASHVDHHVGSAPVVTGSPWERQHSYLGESPDAPGFRLGSLGNAGFPGSWQLHPPDLSSNMFSHVRGNVNDLTSSVGQGSPKQLSHVFPGRLPMTSMSKFDSTNERMRNLYHRRSEANNNHADKKQFELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLTAIDESCRGAYDFLYLPIDFKNKCNVGYAFINMIEPAQIVPFHQAFNGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGANIRVRPGKLRNSINEENRIQGNSSSLASAEEFASGIDSSPSSSRDTD 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi384g00048 947 SUPERFAMILY RNA-binding domain, RBD 773 858 IPR035979 GO:0003676
Vivi384g00048 947 SMART rrm1_1 773 851 IPR000504 GO:0003723
Vivi384g00048 947 SMART rrm1_1 269 337 IPR000504 GO:0003723
Vivi384g00048 947 SMART rrm1_1 354 422 IPR000504 GO:0003723
Vivi384g00048 947 Gene3D - 350 442 IPR012677 -
Vivi384g00048 947 PANTHER RNA RECOGNITION MOTIF-CONTAINING 112 942 - -
Vivi384g00048 947 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 334 IPR000504 GO:0003723
Vivi384g00048 947 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 355 420 IPR000504 GO:0003723
Vivi384g00048 947 SUPERFAMILY RNA-binding domain, RBD 265 425 IPR035979 GO:0003676
Vivi384g00048 947 Gene3D - 254 349 IPR012677 -
Vivi384g00048 947 Pfam RNA recognition motif 2 771 867 IPR007201 -
Vivi384g00048 947 CDD RRM1_MEI2_like 267 342 IPR034453 -
Vivi384g00048 947 FunFam Protein MEI2-like 1 352 446 - -
Vivi384g00048 947 MobiDBLite consensus disorder prediction 913 947 - -
Vivi384g00048 947 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 353 426 IPR000504 GO:0003723
Vivi384g00048 947 CDD RRM3_MEI2_like 774 859 IPR034454 -
Vivi384g00048 947 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 341 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi384g00048 263 427 Eukaryotic Initiation Factors Gene Family AT3G16380 24.731 7.21e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi384g00048 - - gmx:100797616 1452.19