Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi384g00040 ATGCCCTTTTCCTTCTGCAACATCTTGTTACTTTTTCACCTTTTCTACTTTCTTCTTCTTCTTCCTTTTAACAACCTTTCTCTCTCTAGAATGAACAACAACAACATCATCAACACTGGTTGGATGGAAGAGAGAGAAAGTGGAAACACCACTCCTTCTTCATCTGCTTCTACTTTTCTCCAAAACAAACAACAGTTTGCTGCTTTCAAAACCATGCTTGAAATCGATGATGATGAATGGTACATGAAAGACATGGCTTTTCCACCTAACTTGGATACTGTTTTACTCAACAACACTGTTGATTCTGTTTCTTCTTCTTCGTGTTCACCTTCTTCATCTGTTTTCAATGCACTTGATCCTTCACTGTCGAATCTTCAGTGTTTTCTTCCTCAGAATCAGAAACCTGTTGATACTCTTTCTTCTCTTCTCAACAACCCTTTTGAGATTCCTTCTGAATTTGGTTATCTTGAACCTCAAGGTTCAGCATTACCTGCTTCTTCAAATATGGGTAGTTTGGTTGATTTCAATGCTACAGAGATGATGAGCTTGCCCCATTTGCCTCAAACTAGCAATGGCTTCATGGGGTTTCAGAACTCCGAAGAGGGTTCTGGAAAGTCGCTGTTTTTGAACAGGTCCAAGGTTTTGAAACCGCTTGATTCTTTGCCTCCTTCTGGAACACAACCTACTTTGTTTCAGAAGAGAGCGGCATTGAGAAAGAACATGGGGAAGGGTGAAGTTGGGGAAGAGAGTGATAAAAAAAGGAAGGTGAATGGTGGAGATGAAATTGAAGATTTGAGTTTTGATGGGTCTGGTTTGAACTATGATTCTGATGATTTGGCTGAGGGTAATGGCAAAAATGGTGGAAATGCTTCCAATGGGAACAGTACTGTCACTGATCAGAAAGGGAAGAAGAAAGGAATGCCTGCTAAGAATTTGATGGCCGAGCGTCGCCGCAGGAAGAAGCTCAATGATAGACTCTATATGCTGAGGTCTGTTGTTCCCAAGATTAGCAAAATGGATAGGGCTTCAATTCTTGGGGATGCAATTGAGTATCTGAAGGAACTTCTGCAAAGGATCAATGACCTTCATAATGAGTTGGAATCAACACCTGCTGGATCTTCACTGACACCTGCTTCAAGCTACCATCCGCTGACACCGACTGCATCTTCGTTGCCGAGCCATATCAAAGAAGAACTGTGTCCCAGCTCACTGCCAAGCCCCAATGGCCAACCTGCCAGGGTTGAGGTTCGGTTGCGTGAAGGAAGAGCTGTAAATATCCACATGTTTTGTGCTCGCAAACCTGGTCTGTTACTCTCAACCATGAGGGCTTTGGATAGCCTTGGATTAGACATTCAGCAAGCTGTTATAAGCTGTTTCAATGGATTTGCTATGGACATCTTCAAAGCCGAGCAATGCAAAGAAGATCAAGATGTTCATCCGGAGCAAATCAAAGCAGTACTGTTGGATTCAGCTGGTTTTAATGGCATGATCTAA 1494 0.425 MPFSFCNILLLFHLFYFLLLLPFNNLSLSRMNNNNIINTGWMEERESGNTTPSSSASTFLQNKQQFAAFKTMLEIDDDEWYMKDMAFPPNLDTVLLNNTVDSVSSSSCSPSSSVFNALDPSLSNLQCFLPQNQKPVDTLSSLLNNPFEIPSEFGYLEPQGSALPASSNMGSLVDFNATEMMSLPHLPQTSNGFMGFQNSEEGSGKSLFLNRSKVLKPLDSLPPSGTQPTLFQKRAALRKNMGKGEVGEESDKKRKVNGGDEIEDLSFDGSGLNYDSDDLAEGNGKNGGNASNGNSTVTDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPAGSSLTPASSYHPLTPTASSLPSHIKEELCPSSLPSPNGQPARVEVRLREGRAVNIHMFCARKPGLLLSTMRALDSLGLDIQQAVISCFNGFAMDIFKAEQCKEDQDVHPEQIKAVLLDSAGFNGMI 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi384g00040 497 Coils Coil 345 369 - -
Vivi384g00040 497 Pfam Helix-loop-helix DNA-binding domain 313 355 IPR011598 GO:0046983
Vivi384g00040 497 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 306 355 IPR011598 GO:0046983
Vivi384g00040 497 FunFam BHLH transcription factor 302 370 - -
Vivi384g00040 497 Gene3D - 298 370 IPR036638 GO:0046983
Vivi384g00040 497 MobiDBLite consensus disorder prediction 285 301 - -
Vivi384g00040 497 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 195 494 - -
Vivi384g00040 497 CDD ACT_UUR-ACR-like 426 467 - -
Vivi384g00040 497 MobiDBLite consensus disorder prediction 240 312 - -
Vivi384g00040 497 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 374 IPR036638 GO:0046983
Vivi384g00040 497 SMART finulus 312 361 IPR011598 GO:0046983
Vivi384g00040 497 CDD bHLH_AtAMS_like 309 374 - -
Vivi384g00040 497 MobiDBLite consensus disorder prediction 368 388 - -
Vivi384g00040 497 MobiDBLite consensus disorder prediction 240 262 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi384g00040 72 470 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 53.412 1.72e-118 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi384g00040 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi384g00040 - - cave:132174704 537.339