Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi384g00023 ATGGCAGCTTTTTCATATCAATACAATCCTTTCCTTGTTGATCACTCACACTCACCATTCATGTTCAACATAAACACTACCTCTCCTATTCCTCATCCACAGTTTCATCCTCTTCATCAAGATATTATTAACTGTGTTGATCATCAAAGCTCCAAAGTTACAACCATCACTGACAATGAACCTTCTTCTCTCACCAAAAATCTTAGTCCTCAGTCCTCCATGGTATTGGACAAGCTCGAAACCGGCGACGAGCAGGTTACTCAGAAAATTAATCCTATGGAGAAGAAAAGAAGAACCAGAAACAATGGACCTTCCTCAAATAACCCTAAATCTCATGAAATTACAGCAGAAGGAAGAAACAAAAAACAGAAGAAACACAAAGAAGAAGAGAAAAAAGCTGAGAGAAAATGTTTGGATGAGCCTCCAACTGGTTACATCCACGTCAGAGCAAGAAGAGGTCAGGCCACTGATAGCCACAGCCTTGCTGAAAGGGTAAGAAGAGAGAAAATAAGTGAAAGGATGAAGAAGTTGCAACAACTTGTGCCAGGCTGTGATAAGGTCACTGGAAAAGCACTTATGTTAGATGAAATAATCAATTATGTTCAGTCTTTACAAAATCAAGTAGAGTTTTTATCAATGAAACTTACTTCTGTGAATCCAATGTTCTATGAGATGGCAACAGACCTAGAGACTTTCATGGTTAGACCAGAGAAACTAAATAACTTAGCATCACCATCACCACTATCATCATCAGTGTCACATTGCAACAGTCCCAAACAAGGCACAGCTTATGCTGATACAACCACCATGAATACTCCAACCAACATTTTCCAAACTACTACTGACTACAACCACCTTTTGGATACTTCAGCTTCAGTTTTTCTTCAAGGACAGAGATCAAATGTTGTTTCTGAGGATGGTAGCCATTTTTGGGAGGTAGAAGATCAACGACAAAAGTTTCTTAATTCACATGGATTCAACAACAACTTATGTTCGTTTTCATTAATTTAA 1011 0.3838 MAAFSYQYNPFLVDHSHSPFMFNINTTSPIPHPQFHPLHQDIINCVDHQSSKVTTITDNEPSSLTKNLSPQSSMVLDKLETGDEQVTQKINPMEKKRRTRNNGPSSNNPKSHEITAEGRNKKQKKHKEEEKKAERKCLDEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKKLQQLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLTSVNPMFYEMATDLETFMVRPEKLNNLASPSPLSSSVSHCNSPKQGTAYADTTTMNTPTNIFQTTTDYNHLLDTSASVFLQGQRSNVVSEDGSHFWEVEDQRQKFLNSHGFNNNLCSFSLI 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi384g00023 336 Gene3D - 151 225 IPR036638 GO:0046983
Vivi384g00023 336 MobiDBLite consensus disorder prediction 245 267 - -
Vivi384g00023 336 CDD bHLH_AtBPE_like 144 229 - -
Vivi384g00023 336 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 65 268 IPR024097 GO:0006355
Vivi384g00023 336 SMART finulus 160 210 IPR011598 GO:0046983
Vivi384g00023 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 222 IPR036638 GO:0046983
Vivi384g00023 336 MobiDBLite consensus disorder prediction 78 142 - -
Vivi384g00023 336 MobiDBLite consensus disorder prediction 114 142 - -
Vivi384g00023 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 204 IPR011598 GO:0046983
Vivi384g00023 336 FunFam Basic helix-loop-helix transcription factor 151 224 - -
Vivi384g00023 336 Pfam Helix-loop-helix DNA-binding domain 158 205 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi384g00023 1 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 43.421 2.66e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi384g00023 HLH 2.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi384g00023 - - gmx:100806696 409.453