Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi383g00020 ATGGAAAGAGACGGTTACAGAAACACCACCGCTGGCCGTAACGGTAACCGTGGCGGTGGTGGTCATGGTCATGGTCGTGGCAGAGGAAGAGAGTTTCATCAGCAATCAAGTGCCGGTGGTGGTGGTGGCAGAGGAAGAGGAAGGGAGTTTTACCAGCATCAAGAAACCGGTGCCGGTACTGATGGTGGCAGAGGAAGAGCAAGAGATTTTTATCAGCGTCAAGAAACCAGCGCCGGTAATGGTGGTGGCAGAGGAAGAGCAAGAGATTTTTATCAGCGTCAAGAAACCAACGCCGGTAATGGTGGTGGCAGAGGAAGAGCAAGGGAGTTTTACCGGAATCAAGAAACCGGTGCCGATAATGGTGGTGGCAGAGGAAGGGGAAGAGAGTTTCATCAGCATCAGGAAACCAGTTCCGGTGGTGGTGGCAGAGGAAGACAGTTTCATCAGCAACAAGAAACCAGTGCCGGTGGTCGCGGTAGAGGAAGAGAGTTTCATCAGCCAGAACAAACCGGTGCTGATGGTGGCGGCGTCGACGGAGGGTTACAACCCCAACCAGAAAACTGTTGGTCGCGAAGGCCTAATATCACTAAGCACACCAATCTTCAACCCGAAGTCCAAACTCATCCACTTCCAGATATTGGATCTCTGAAAGTAAAAGAGCAGCCAGAGGAAAGTCCAACAACTAGACCCATACGCCGGCCTGACAAGGGCGGGACAGAGTATATTCGCAAATGCAAACTTCATGTGAATCATTTTCCGGTTACCTACGAACCAGAAAAAACTATCATGCACTACGATGTCGATGTGAAACCTACTTTGCCGCCCAGAAATAATTTTTCTCCTCCAAAGAAGATTTCCAAGTTTGAGTTATCTTTAATCAGAAACAAATTGCTTACTGAGAGACCGCTTTTGTTGATGACTGCTTATGATGGAGGATCGAACATCTATAGTGCTAGTGAATTGCCTGAAGAAACTCTTACTGTCGAAGTCTCAAGAGGAGAAGGCGAAAGAACTGTTTCTTATACAGTTACTATAAAGCTGGTGAACAAACTCGAGCTTCGCATGTTGAGAGATTACATTAGGGGCGGAGCGTATTCCATTCCAAGGGATATTTTACAGGGAATGGACTTGGTGGTAAAAGAGAATCCAACAAGACGCACAATTGCTTTAGGACGACGTTTTTTCCCCACTAATCCTACCCTGAAAGAGATGGATCTCACACGGGGAGTAATTGCAATTGGAGGGTTTCATCATAGTCTCAAGACCACAGCTCAAGGTTTATCTTTGTGTCTTGACTATTCAGTTTTGCCTTTTTCAAAGAAAATGCCAGTCCTAGATTTCCTCGTTGAGCGTATCAATAATTTCAATTTGAATCAGTTTGAGAAATTTAGGAAAGTTGTCGAGAAGGAACTCGTTGGATTGAAAGTGAATGTCATTCACAGATTCACCAAACAAAAGTACACCATTACAGGGTTAACACGTGAAAAAACACGCGATATCACTTTCCTTTGTGTGGACCAAGAGGGCCAAAACCCCCCTAGCAGAAAATATCTTACTGACTACTTTAGAGAAAAACACTCCTTTCATATAAAAAACACAGATATTCCTGCATTGGTTTTCGGGGGCAACAAGGCTAATTATATGCCTATGGAGCTCTGCGTCTTGGTTGAAGGTCAGAGATATCCCACAGACAGTCTGGATCTCTTTGCTTCCACGAAGCTGAAAAACATGTCCTTGGCTAGTCCAAAGGATAGAAAATCTTCAATAGAATTGATGATGACGTCCCCTGTTGGACCGCGCAGCGGTGATATTCTTCAGAATTTTGGAATGGATGTCATACCTTCCATGACAAATGTGACCGGACGTGTAATTGCGCCTCCAATATTGAAGTTAGGTGATCCAAATGGAAAGAGTGGTACTGTGAATCTGAGTCTGGAGAAATGTCATTGGAATTTAGTCGGAAAGTCAATGGTAGATGGAAAACCTGTTGAGCATTGGGGTATCCTTGATTTTACCAGCAAGGGATCTATCCACAAATTTAATCGTGGTCAGTTTGTAAAAGATCTTAAGGAAAAGTACAAGAAGTTGGCTATTGACATGAAGGATCCTATTTTGTATGAGGAATCTGAAATGAAGCAACTTGGGGATTACAATTCACTGTCTAAATTACTTGAGCGAATAAGTCAACAGCGGCTGCAGTTTCTTCTTTGTGTGATGGACAAAAGGGTTGAAGGTTACAAGCGCCTCAAGTGGATTGCTGAGACCAAGGTTGGCATAGTGACACAATGCTGCTTATCTAATAAAAGCAATCCTAATAAAGGGAAAGACCAGTATTTAACAAATCTTGCTCTAAAAATCAATGCGAAAATTGGAGGCAGTAATGTAGAGCTCCTTAATAGGATCCCACACTTTGAGAATGACAGGCATGTTATGTTCATAGGGGCTGATGTCAATCATCCAGGTTCTCAGGATATAGAAAGTCCATCAATTGCGGCGGTGGTTGCCACAATTAACTGGCCAGCTGCAAATCGCTATGCAGCACGAGTTTTTGCTCAAGAGCGTCGAATGGAGAAAATTTTGCATTTTGGAAGGGTTTGCCTTGACCTTGTTACACATTATGCAAAGTTAAACAAAGCCAGGCCCGAAAAAATTGTTATCTTTCGAGATGGGGTCAGTGAAAGCCAGTTTTACATGGTTCTTACAGAGGAGTTGAAAGATTTGAAGACTGCATTTGAGAGTATAAATTACTCTCCAAGTATCACTCTTATTGTAGCTCAAAAGCGACATCAAACTCGATTGTTTCCTGTGAGTGCGAATGGGGTTTGTACTGGCAACGTGTTCCCTGGAACCGTTGTAGACACAGATGTGGTACATCCTTTTGAATTTGATTTTTACCTTTGTAGTCACAATGGAAGCCTAGGTACAAGCAAACCAACACACTACCATGTGTTGTGGGATGAGAACAAGTTTAGTTCTGATGATTTGCAGAAACTGATATATAATCTATGCTTTACCTTTGCAAGGTGCACAAAACCTGTATCTTTAGTCCCTCCAGTGTACTATGCCGACCTTGCTGCATATAGAGGAAGACTATACTATGAAGCTAAGAAGTCAGCAAACAGAAATGATGAGCTGTTTTCCGAATTGCATCCTAATACGGAAAACATGATGTTCTTTGTCTGA 3183 0.432 MERDGYRNTTAGRNGNRGGGGHGHGRGRGREFHQQSSAGGGGGRGRGREFYQHQETGAGTDGGRGRARDFYQRQETSAGNGGGRGRARDFYQRQETNAGNGGGRGRAREFYRNQETGADNGGGRGRGREFHQHQETSSGGGGRGRQFHQQQETSAGGRGRGREFHQPEQTGADGGGVDGGLQPQPENCWSRRPNITKHTNLQPEVQTHPLPDIGSLKVKEQPEESPTTRPIRRPDKGGTEYIRKCKLHVNHFPVTYEPEKTIMHYDVDVKPTLPPRNNFSPPKKISKFELSLIRNKLLTERPLLLMTAYDGGSNIYSASELPEETLTVEVSRGEGERTVSYTVTIKLVNKLELRMLRDYIRGGAYSIPRDILQGMDLVVKENPTRRTIALGRRFFPTNPTLKEMDLTRGVIAIGGFHHSLKTTAQGLSLCLDYSVLPFSKKMPVLDFLVERINNFNLNQFEKFRKVVEKELVGLKVNVIHRFTKQKYTITGLTREKTRDITFLCVDQEGQNPPSRKYLTDYFREKHSFHIKNTDIPALVFGGNKANYMPMELCVLVEGQRYPTDSLDLFASTKLKNMSLASPKDRKSSIELMMTSPVGPRSGDILQNFGMDVIPSMTNVTGRVIAPPILKLGDPNGKSGTVNLSLEKCHWNLVGKSMVDGKPVEHWGILDFTSKGSIHKFNRGQFVKDLKEKYKKLAIDMKDPILYEESEMKQLGDYNSLSKLLERISQQRLQFLLCVMDKRVEGYKRLKWIAETKVGIVTQCCLSNKSNPNKGKDQYLTNLALKINAKIGGSNVELLNRIPHFENDRHVMFIGADVNHPGSQDIESPSIAAVVATINWPAANRYAARVFAQERRMEKILHFGRVCLDLVTHYAKLNKARPEKIVIFRDGVSESQFYMVLTEELKDLKTAFESINYSPSITLIVAQKRHQTRLFPVSANGVCTGNVFPGTVVDTDVVHPFEFDFYLCSHNGSLGTSKPTHYHVLWDENKFSSDDLQKLIYNLCFTFARCTKPVSLVPPVYYADLAAYRGRLYYEAKKSANRNDELFSELHPNTENMMFFV 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi383g00020 1060 CDD PAZ_argonaute_like 442 556 - -
Vivi383g00020 1060 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 241 1036 - -
Vivi383g00020 1060 Pfam N-terminal domain of argonaute 243 378 IPR032474 -
Vivi383g00020 1060 Gene3D - 623 798 - -
Vivi383g00020 1060 SMART PAZ_2_a_3 442 580 IPR003100 GO:0005515
Vivi383g00020 1060 SMART Piwi_a_2 734 1034 IPR003165 GO:0003676
Vivi383g00020 1060 CDD Piwi_ago-like 604 1033 IPR045246 -
Vivi383g00020 1060 Gene3D paz domain 437 561 - -
Vivi383g00020 1060 SUPERFAMILY Ribonuclease H-like 719 1034 IPR012337 -
Vivi383g00020 1060 ProSiteProfiles Piwi domain profile. 734 1034 IPR003165 GO:0003676
Vivi383g00020 1060 Pfam PAZ domain 450 566 IPR003100 GO:0005515
Vivi383g00020 1060 MobiDBLite consensus disorder prediction 134 156 - -
Vivi383g00020 1060 MobiDBLite consensus disorder prediction 217 238 - -
Vivi383g00020 1060 Pfam Piwi domain 735 1033 IPR003165 GO:0003676
Vivi383g00020 1060 MobiDBLite consensus disorder prediction 1 238 - -
Vivi383g00020 1060 Pfam Argonaute linker 1 domain 391 438 IPR014811 -
Vivi383g00020 1060 SUPERFAMILY PAZ domain 438 590 IPR036085 GO:0005515
Vivi383g00020 1060 SMART DUF1785_2 388 441 IPR014811 -
Vivi383g00020 1060 ProSiteProfiles PAZ domain profile. 442 557 IPR003100 GO:0005515
Vivi383g00020 1060 Gene3D - 804 1060 IPR036397 GO:0003676
Vivi383g00020 1060 MobiDBLite consensus disorder prediction 187 206 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi383g00020 215 1038 Eukaryotic Initiation Factors Gene Family AT1G48410 36.082 3.08e-148 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi383g00020 K11593 - gmx:100805250 1126.31