Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi378g00013 ATGAGTTCCGGTGAGTTGGGTTGCATCTACGCCACCTTGATTCTCCACGACGACGGAATCCCAATCACCGCGGAGAAGATCAGCACCATCTTGAAGGCAGCTGATGTCACCGTCGAATCCTACTGGCCAAGCCTATTCGCTAAGCTTGCTCAGAGCAAGAACGTTGACGATCTTGTTTTGAACGCTGGCGCAGCAGGTGGAGCCGCCGTTGTTTCAGCCGGAGGAGCCGCACCCGCCGCTGGTGGAGCTGCAGCAGCAGAGGCACCTGTCGAGGCAAAGAAGGAAGAAGCCAAGGAAGAAAGTGATGATGACATGGGCTTTAGTTTGTTTGATTAG 336 0.5446 MSSGELGCIYATLILHDDGIPITAEKISTILKAADVTVESYWPSLFAKLAQSKNVDDLVLNAGAAGGAAVVSAGGAAPAAGGAAAAEAPVEAKKEEAKEESDDDMGFSLFD 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi378g00013 111 MobiDBLite consensus disorder prediction 89 105 - -
Vivi378g00013 111 FunFam 60S acidic ribosomal protein P1 1 63 - -
Vivi378g00013 111 Hamap 50S ribosomal protein L12 [rpl12]. 6 111 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vivi378g00013 111 CDD Ribosomal_P1 5 61 - -
Vivi378g00013 111 Pfam 60s Acidic ribosomal protein 22 110 - -
Vivi378g00013 111 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 111 - -
Vivi378g00013 111 PRINTS Ribosomal protein P2 signature 25 36 IPR001859 GO:0003735|GO:0005840|GO:0006412
Vivi378g00013 111 PRINTS Ribosomal protein P2 signature 83 97 IPR001859 GO:0003735|GO:0005840|GO:0006412
Vivi378g00013 111 PRINTS Ribosomal protein P2 signature 98 109 IPR001859 GO:0003735|GO:0005840|GO:0006412
Vivi378g00013 111 MobiDBLite consensus disorder prediction 83 111 - -
Vivi378g00013 111 Gene3D - 1 63 IPR038716 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi378g00013 1 111 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 54.054 2.32e-38 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi378g00013 K02942 - egr:104437298 124.02