Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi378g00009 ATGAGTAGTCGCTTTTCTCGCACAATCTATGTTGGCAACCTGCCCTCTGATGTAAGGGAATCAGAAATTGATGATCTGTTCTACAAGTATGGCCGCATAATGGAAATTGAATTGAAAGTTCCTCCTCGCCCTCCGTGTTATTGTTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGATGCTATTCGGGGTAGGGATGGTTACAACTTTGATGGCTGTCGATTAAGGGTGGAGCTTGCCCATGGAGGTAGGGGGCCATCATCAAGTGATCGACGGGGGTATGGTGGCAGTGGTGGCGGCGGTGGCGGGGGTGGCGGAGGAGGTGGTGGCGGTGGTGCTGGTGGGGGAAGATTTGGTGTCTCTCGCCATTCTGAGTTTCGAGTTATTGTTCGTGGACTCCCATCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAAGTTTCCCGTGATAGTGAAGGGACTTTTGGCCTTGTTGATTACACTAATTATGATGACATGAAATATGCTATTCGAAAACTGGATGACACTGAGTTCAAAAATCCTTGGGCAAGATCATATATTCGGGTGAAGAAGTATGAGAGCAGTCGTTCAAGGAGCCGCAGCAGAAGCCCCAGCCGGAGCAGAAGTCCAAAAAGGGCTAGAAGTAGATCTTTGGGGCGATCTGTGTCCAGGTCACGATCTATTTCTAGATCCAGATCAGCATCACCAATCAAGGCTTCAAGGCCAAAATCACGATCACGCTCACCCTCACGTTCAGCATCTCCACGATCACCACGCCAGGTTCTGTCAGGGAGTGGTTGA 831 0.4886 MSSRFSRTIYVGNLPSDVRESEIDDLFYKYGRIMEIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGSGGGGGGGGGGGGGGGAGGGRFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYDDMKYAIRKLDDTEFKNPWARSYIRVKKYESSRSRSRSRSPSRSRSPKRARSRSLGRSVSRSRSISRSRSASPIKASRPKSRSRSPSRSASPRSPRQVLSGSG 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi378g00009 276 MobiDBLite consensus disorder prediction 201 276 - -
Vivi378g00009 276 MobiDBLite consensus disorder prediction 230 276 - -
Vivi378g00009 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 204 IPR000504 GO:0003723
Vivi378g00009 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Vivi378g00009 276 FunFam serine/arginine-rich splicing factor SR34A-like 126 203 - -
Vivi378g00009 276 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 268 - -
Vivi378g00009 276 MobiDBLite consensus disorder prediction 211 229 - -
Vivi378g00009 276 SUPERFAMILY RNA-binding domain, RBD 6 194 IPR035979 GO:0003676
Vivi378g00009 276 Gene3D - 2 124 IPR012677 -
Vivi378g00009 276 MobiDBLite consensus disorder prediction 81 116 - -
Vivi378g00009 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Vivi378g00009 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 190 IPR000504 GO:0003723
Vivi378g00009 276 Gene3D - 126 203 IPR012677 -
Vivi378g00009 276 SMART rrm1_1 127 200 IPR000504 GO:0003723
Vivi378g00009 276 SMART rrm1_1 8 78 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi378g00009 8 80 Eukaryotic Initiation Factors Gene Family AT3G11400 31.579 3.69e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi378g00009 K12890 - gmx:100800653 348.206