Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi378g00008 ATGAGTAGTCGCTTTTCTCGCACAATCTATGTTGGCAACCTGCCCTCTGATGTAAGGGAATCAGAAATTGATGATCTGTTCTACAAGTATGGCCGCATAATGGAAATTGAATTGAAAGTTCCTCCTCGCCCTCCGTGTTATTGTTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGATGCTATTCGGGGTAGGGATGGTTACAACTTTGATGGCTGTCGATTAAGGGTGGAGCTTGCCCATGGAGGTAGGGGGCCATCATCAAGTGATCGACGGGGGTATGGTGGCAGTGGTGGCGGCGGTGGCGGGGGTGGCGGAGGAGGTGGTGGCGGTGGTGCTGGTGGGGGAAGATTTGGTGTCTCTCGCCATTCTGAGTTTCGAGTTATTGTTCGTGGACTCCCATCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAAGTTTCCCGTGATAGTGAAGGGACTTTTGGCCTTGTTGATTACACTAATTATGATGACATGAAATATGCTATTCGAAAACTGGATGACACTGAGTTCAAAAATCCTTGGGCAAGATCATATATTCGGGTGAAGAAGTATGAGAGCAGTCGTTCAAGGAGCCGCAGCAGAAGCCCCAGCCGGAGCAGAAGTCCAAAAAGGGCTAGAAGATCTTTGGGGCGATCTGTGTCCAGGTCACGATCTATTTCTAGATCCAGATCAGCATCACCAATCAAGGCTTCAAGGCCAAAATCACGATCACGCTCACCCTCACGTTCAGCATCTCCACGATCACCACGCCAGGTTCTGTCAGGGAGTGGTTGA 828 0.4891 MSSRFSRTIYVGNLPSDVRESEIDDLFYKYGRIMEIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGSGGGGGGGGGGGGGGGAGGGRFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYDDMKYAIRKLDDTEFKNPWARSYIRVKKYESSRSRSRSRSPSRSRSPKRARRSLGRSVSRSRSISRSRSASPIKASRPKSRSRSPSRSASPRSPRQVLSGSG 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi378g00008 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 190 IPR000504 GO:0003723
Vivi378g00008 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Vivi378g00008 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 204 IPR000504 GO:0003723
Vivi378g00008 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Vivi378g00008 275 FunFam serine/arginine-rich splicing factor SR34A-like 126 203 - -
Vivi378g00008 275 Gene3D - 2 122 IPR012677 -
Vivi378g00008 275 MobiDBLite consensus disorder prediction 211 229 - -
Vivi378g00008 275 SUPERFAMILY RNA-binding domain, RBD 6 194 IPR035979 GO:0003676
Vivi378g00008 275 Gene3D - 126 203 IPR012677 -
Vivi378g00008 275 MobiDBLite consensus disorder prediction 81 116 - -
Vivi378g00008 275 MobiDBLite consensus disorder prediction 230 275 - -
Vivi378g00008 275 MobiDBLite consensus disorder prediction 201 275 - -
Vivi378g00008 275 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 266 - -
Vivi378g00008 275 SMART rrm1_1 127 200 IPR000504 GO:0003723
Vivi378g00008 275 SMART rrm1_1 8 78 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi378g00008 8 80 Eukaryotic Initiation Factors Gene Family AT3G11400 31.579 3.90e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi378g00008 K12890 - gmx:100800653 350.132