Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi378g00007 ATGGCGGTCGCTGAGAATGTTGTTGGAACCAAAATCGATGCTTCCGGTGACAATTTGGACAAGAGTGTGGTTTCATCGGACTCGACTGAGGTTGACAAATCGAAACCCAAAAGTGATCAGAATCTGAACAACACCAACAACAACTCCAACGGTGTTCACACCGTTCCGAATGGGAATCATGGGTTCCTGAGTCATCAGATGGGTCAGATGCATGTGAATGGGGCTCAGAATCAGCTTTTGGTTGTCAACAATGGTGGCGAGAGTTTCAAGCGTGAAATGAGGGATTTGGAAGAGTTGTTGTCTAAGTTGAATCCCATGGCTGAGGAATTTGTTCCTCCGTCACTAGTAACTAATTATCAGGGGTATTTAGCTGCTGGACCTAATGCCGGGTTTGGTTACCCTAACAATTTTATGATTCAGAACAATTCAGGGAATGCTAATGGACAGATTAACAGAAGGAGAAAGAATGGATATAATAATGCGAAGCGGAGAGTGAACCATAAAATGGATATGGAGAAAAGAGAAGAGATGATAAGGAGGACTGTTTATGTGTCTGACATTGATCAGCTGGTCACTGAAGAGCAGCTGGCAGCTCTCTTTCTGAACTGCGGTCAGGTTGTTGATTGCCGTGTATGTGGGGATCCCAATTCTATTCTTCGGTTTGCCTTCGTCGAGTTTACAGATGAAGTTGGTGCTAGGACTGCTTTGAACCTGTCTGGAACCATGCTCGGGTATTACCCATTGAGAGTGCTCCCTTCGAAGACTGCCATTGCACCTGTTAATCCAACATATCTGCCTAGGTCTGAAGATGAAAGAGAGATGTGCACTAGAACAATTTATTGCACAAATATCGACAAGAAGCTTACTACAGCAGATGTCAAACACTTCTTTGAGTCTCTTTGCGGAGAGGTTCAACGCCTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCTTTTGTGGAGTTCACCGTGGCTGAGAGTGCAATTGCAGCACTGAGCTGTAGTGGCGTGGTTTTGGGCGCACTTGCTATAAGGGTGAGTCCATCCAAGACACCAGTCCGCCCTCGCGCAACCCGTCCTCCCATGCACTGA 1098 0.4608 MAVAENVVGTKIDASGDNLDKSVVSSDSTEVDKSKPKSDQNLNNTNNNSNGVHTVPNGNHGFLSHQMGQMHVNGAQNQLLVVNNGGESFKREMRDLEELLSKLNPMAEEFVPPSLVTNYQGYLAAGPNAGFGYPNNFMIQNNSGNANGQINRRRKNGYNNAKRRVNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEVGARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTYLPRSEDEREMCTRTIYCTNIDKKLTTADVKHFFESLCGEVQRLRLLGDYHHSTRIAFVEFTVAESAIAALSCSGVVLGALAIRVSPSKTPVRPRATRPPMH 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi378g00007 365 CDD RRM2_CID8_like 273 354 IPR034825 -
Vivi378g00007 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 255 IPR000504 GO:0003723
Vivi378g00007 365 Gene3D - 139 257 IPR012677 -
Vivi378g00007 365 Gene3D - 262 360 IPR012677 -
Vivi378g00007 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 353 IPR000504 GO:0003723
Vivi378g00007 365 SUPERFAMILY RNA-binding domain, RBD 152 257 IPR035979 GO:0003676
Vivi378g00007 365 CDD RRM1_CID8_like 178 257 IPR034823 -
Vivi378g00007 365 MobiDBLite consensus disorder prediction 1 64 - -
Vivi378g00007 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 279 341 IPR000504 GO:0003723
Vivi378g00007 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 245 IPR000504 GO:0003723
Vivi378g00007 365 Pfam Ataxin-2 C-terminal region 100 114 IPR009818 -
Vivi378g00007 365 MobiDBLite consensus disorder prediction 38 64 - -
Vivi378g00007 365 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 98 358 - -
Vivi378g00007 365 SMART rrm1_1 278 349 IPR000504 GO:0003723
Vivi378g00007 365 SMART rrm1_1 181 251 IPR000504 GO:0003723
Vivi378g00007 365 SUPERFAMILY RNA-binding domain, RBD 267 360 IPR035979 GO:0003676
Vivi378g00007 365 FunFam Polyadenylate-binding protein-interacting protein 10 271 349 - -
Vivi378g00007 365 FunFam Polyadenylate-binding protein-interacting protein 11 143 257 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi378g00007 179 348 Eukaryotic Initiation Factors Gene Family AT1G34140 26.437 7.74e-12 64.3