Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi378g00006 ATGGCTGTTGCTGATAATGTTAGTGGCAAAATCGGTTCTTCAAACCAGAATTTGGAGAACAACAACACCAACAACAACGTTGTGTCATCTGAGTCAACTGAGGTGGAGAAATCGAAGCCTAGGAGCGATCAGGATGTGTCGATCAACAACAACGGTGTGTTCAACCATCAGCTTCCGAATGGTGGTAATTATAGCTTCAAGGCTCATCAATTGGGTCAGATGCATGCTAACGGGGTTCAGAATCAGCAGTTTGTGATGAACAATGATGGGTATGTGATGAACGGTGAGAACGAGGGTGAGAGTTTCAAGCGTGAAATGAGGGATTTGGAGGAATTGTTGTCGAAGCTGAATCCCATGGCTGAGGAATTTGTGCCTCCGTCGCTAACGAATAATCATGGCTACTTAGCTGGACCTGCTGCTGGGTTTGGTTACCCTAACAATTATATACTACTTAATAATTTTGCTAATGCTAACGGCCAAACTAACCGAAGGAGGAAGACTGGCTATAGTACTAATGGAAAGAGAAGAGTGAATCATAAAGTAGATATGGAGAAACGAGAGGAGATGATAAGGAGGACTGTTTACGTGTCTGACATTGATCAACTGGTAACTGAAGAGCAGCTGGCATCTCTCTTTCTTAATTGCGGCCAGGTTGTTGACTGCCGTGTTTGCGGAGATCCCAATTCTATTCTCCGTTTTGCTTTCATTGAGTTTACTGATGAAGAGAGTGCAAGGGCTGCTGTGAGCCTTTCTGGAACTATGCTGGGATATTACCCATTGAGAGTGCTGCCTTCCAAAACTGCCATTGCACCTGTCAATCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCTAGAACAATTTATTGCACTAACATCGACAAAAAGCTGACTCAAGCAGATGTGAAGCACTTCTTTGAGTCTATCTGTGGAGAGGTTCAACGACTGAGGCTCCTTGGGGATTACCATCATTCAACTCGGATTGCATTTGTTGAGTTCACAGTGGCTGACAGTGCAATTGCCGCCCTAAGCTGCAGTGGCGTGATTTTGGGTGCTCTGCCTATAAGGGTGAGTCCGTCAAAGACACCAGTCCGCGCTCGTTCTCCTCGTAGTCCATGA 1128 0.4539 MAVADNVSGKIGSSNQNLENNNTNNNVVSSESTEVEKSKPRSDQDVSINNNGVFNHQLPNGGNYSFKAHQLGQMHANGVQNQQFVMNNDGYVMNGENEGESFKREMRDLEELLSKLNPMAEEFVPPSLTNNHGYLAGPAAGFGYPNNYILLNNFANANGQTNRRRKTGYSTNGKRRVNHKVDMEKREEMIRRTVYVSDIDQLVTEEQLASLFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESARAAVSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFTVADSAIAALSCSGVILGALPIRVSPSKTPVRARSPRSP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi378g00006 375 CDD RRM2_CID8_like 285 366 IPR034825 -
Vivi378g00006 375 CDD RRM1_CID8_like 190 269 IPR034823 -
Vivi378g00006 375 Gene3D - 276 372 IPR012677 -
Vivi378g00006 375 Gene3D - 154 269 IPR012677 -
Vivi378g00006 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 267 IPR000504 GO:0003723
Vivi378g00006 375 Coils Coil 92 112 - -
Vivi378g00006 375 MobiDBLite consensus disorder prediction 8 33 - -
Vivi378g00006 375 SUPERFAMILY RNA-binding domain, RBD 280 370 IPR035979 GO:0003676
Vivi378g00006 375 SMART rrm1_1 193 263 IPR000504 GO:0003723
Vivi378g00006 375 SMART rrm1_1 290 361 IPR000504 GO:0003723
Vivi378g00006 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 365 IPR000504 GO:0003723
Vivi378g00006 375 MobiDBLite consensus disorder prediction 1 51 - -
Vivi378g00006 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 257 IPR000504 GO:0003723
Vivi378g00006 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 353 IPR000504 GO:0003723
Vivi378g00006 375 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 111 370 - -
Vivi378g00006 375 Pfam Ataxin-2 C-terminal region 113 127 IPR009818 -
Vivi378g00006 375 FunFam Polyadenylate-binding protein-interacting protein 10 283 361 - -
Vivi378g00006 375 FunFam Polyadenylate-binding protein-interacting protein 11 155 269 - -
Vivi378g00006 375 SUPERFAMILY RNA-binding domain, RBD 181 268 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi378g00006 191 353 Eukaryotic Initiation Factors Gene Family AT1G34140 25.150 3.18e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi378g00006 - - gmx:106794116 587.03