Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi378g00004 ATGAGTCCAAACGTTGTTGTTCCGAAACAACATAGTAAGATTTTTGTGGGGGGATTGGCTTGGAAAACCCAAACAGACACACTGAAAAGCTATTTTGATCAGTTCGGTGAGATTCTTGAAGCTGTTGTCATCATTGACAGAACCACCGGAAAATCAAAAGGATATGGCTTTGTTACTTTCAAGGATCCAAATTCTGCTATAATAGCTTGCCAGAATCCTAATCCTGTCATTGATGGAAGAAGAACTAACTGTAATCTTGCATTGCCAAAATCTAATCCATCATCATCAACATCAACAGGAAGGCGGAATCTCAATAGTCCTTCATGGAACTATGCACCATTACAATTTTCAAGCTCCTATAATTATTACAATCAACATCTATCTCAATATGCATATCCTTATCCAGTTTATAGGTACTCTTACCCTGGATATTTTCGCCCACACAACATTTATGACATGAACTATCCTAATGTATATGGTGGACCACAATTTCCAGTTCCTTTGTATCCACCATATTACCAACCATTTTATGGGCACAATAAGCATTTAGTTCCGACATCATATGTGAAAAAGACTCAATTCCCTGGACCTATTACTAGCACTGGAGCTGTCACAGAAATAGTAGCTGCAACAAGAGTGGTGGAATCTCCCAAAGATCAAACATCTTCAAATTAA 675 0.3793 MSPNVVVPKQHSKIFVGGLAWKTQTDTLKSYFDQFGEILEAVVIIDRTTGKSKGYGFVTFKDPNSAIIACQNPNPVIDGRRTNCNLALPKSNPSSSTSTGRRNLNSPSWNYAPLQFSSSYNYYNQHLSQYAYPYPVYRYSYPGYFRPHNIYDMNYPNVYGGPQFPVPLYPPYYQPFYGHNKHLVPTSYVKKTQFPGPITSTGAVTEIVAATRVVESPKDQTSSN 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi378g00004 224 SMART rrm1_1 13 85 IPR000504 GO:0003723
Vivi378g00004 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 89 IPR000504 GO:0003723
Vivi378g00004 224 PANTHER BOULE-RELATED 12 195 - -
Vivi378g00004 224 SUPERFAMILY RNA-binding domain, RBD 8 108 IPR035979 GO:0003676
Vivi378g00004 224 CDD RRM_RBM24_RBM38_like 12 87 - -
Vivi378g00004 224 Gene3D - 2 103 IPR012677 -
Vivi378g00004 224 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 72 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi378g00004 14 90 C2H2 Transcription Factor Family AT2G19380 44.156 5.14e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi378g00004 - - cam:101508568 267.314