Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi378g00003 ATGGCGCTAGCAACACTCCCTCTATTCTCTAATCCTCCATGCCATTGCTCTTCTTCTATAACAACCTTTCTTCCTTCACATTCTCGTCATCTTCCAACCCAACCCTTCATCTCCCCACTCACCAAATCACAACCACCAAACAGCAACTATTTCCTTTCCCAATCTCGACTCTCCACCCACTGCCGCTGCACTTCCCACACGCCCAATCTCGACTTTCAAGACGTCAGACTTGTCACTTTGTTTCAAGAAATCGGTATCAGCTTTGAGGAAGCCAATTTGCTCTTGAGCAATGCTTCCGAACTGACCTCGATACAACTAGATTCATTGCGGGATCGCATTCTTTCTTTAAAATCTCTTGGGTTAGGTCGTATGTCCATCAATCACATAGTTATAAAGCAGTTAAATATGCTAACTTCAAATGAAATTGACCCATTGTTAAACTTTTTGAGAAATGAATTGCAAGGACAGGTTGAGAAAGCTAAGGTGAAACGTCTTTTATCGGCTAATGAGCCGAAAGAATTATCTGATTTTCTTCAGAAGGTTCAATTGCTTATTGACAGTGGAATTGGGGTTGATAAGATTGCACATGTGCTTAACAGAGTGAGTTTGTCAAAGGCAATTTGTCATAGGTCAATGGAAGAAATTGAAAGAGTAATTAGTTTCTTAAAACCATTTGGTGGCGTTGATTTGATTGTGAAGCGCCCTTCAACTCTCAACTATGATTTGGATAGTCAGCTGAAACCGAGAATCAGGGTTCTTACTGAGTTAAGTGGCGGAGATGAGGATAGTGTTGGGAAAGTGCTGAATAAGTACCCTAAGATCTTGAATTTTAGGGCGGAACGTCTTGAGGAACATATAGAGTTCTTGAGGTCTTTTGCAGAACTTGATGATCAACAAATATTTAAGATAGTGTTGGTGTATCCAGCTATCTTCTCTAATAGTAGAGAGAGGAAACTGCGTCCTAGAATACAATTTCTCAAGGATTGTGGATTAGACTCGAGCGCTGATATCTTTAAATTCTTTATCAAAGCACCGGTGTTTTTGGGCCTTTCGTTCCGCCATAACCTTGCTTATAAGCTTGTGTTTTTGGTCAAGATTGGGTATGAATATAGGACAAAAGAGTTGGCAATGGCGATCGCGGCTTCTACTAGAATAAGCTGTGCGAATATGCAGAAGATGGTGAGTGTATACTTGAATTACGGGTTGTCGTCTGAAGACATTTTTGCTATGAGTAAGAAGCATCCACCGACACTGCAGTGTAATCATGCCTCGTTGGAGAAGAAGATTAAGTATTTGACAGAGGAGATGGATCGTGACATTCAGGAGTTGTTGGATTTTCCTGCATTTCTTGGATACAAGTTAGATGACAGAATTAAGTATAGGTATGAAATAAAGAAGGATTCATGTGAGGGACAAATGTCTGTCAAGAAGCTTTTAACTGTTTCGAATAAGAACTTCGCCGCTCGGCTGAAAAAGGCTTCTGTAAAATCTAAATTGGAATAA 1503 0.4032 MALATLPLFSNPPCHCSSSITTFLPSHSRHLPTQPFISPLTKSQPPNSNYFLSQSRLSTHCRCTSHTPNLDFQDVRLVTLFQEIGISFEEANLLLSNASELTSIQLDSLRDRILSLKSLGLGRMSINHIVIKQLNMLTSNEIDPLLNFLRNELQGQVEKAKVKRLLSANEPKELSDFLQKVQLLIDSGIGVDKIAHVLNRVSLSKAICHRSMEEIERVISFLKPFGGVDLIVKRPSTLNYDLDSQLKPRIRVLTELSGGDEDSVGKVLNKYPKILNFRAERLEEHIEFLRSFAELDDQQIFKIVLVYPAIFSNSRERKLRPRIQFLKDCGLDSSADIFKFFIKAPVFLGLSFRHNLAYKLVFLVKIGYEYRTKELAMAIAASTRISCANMQKMVSVYLNYGLSSEDIFAMSKKHPPTLQCNHASLEKKIKYLTEEMDRDIQELLDFPAFLGYKLDDRIKYRYEIKKDSCEGQMSVKKLLTVSNKNFAARLKKASVKSKLE 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi378g00003 500 PANTHER CGI-12 PROTEIN-RELATED 66 257 IPR003690 GO:0003690|GO:0006355
Vivi378g00003 500 Pfam mTERF 229 365 IPR003690 GO:0003690|GO:0006355
Vivi378g00003 500 Pfam mTERF 57 255 IPR003690 GO:0003690|GO:0006355
Vivi378g00003 500 Pfam mTERF 334 487 IPR003690 GO:0003690|GO:0006355
Vivi378g00003 500 Gene3D Transcription termination factor 3, mitochondrial 286 497 IPR038538 -
Vivi378g00003 500 Gene3D Transcription termination factor 3, mitochondrial 56 257 IPR038538 -
Vivi378g00003 500 SMART mt_12 440 472 IPR003690 GO:0003690|GO:0006355
Vivi378g00003 500 SMART mt_12 301 332 IPR003690 GO:0003690|GO:0006355
Vivi378g00003 500 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Vivi378g00003 500 SMART mt_12 228 259 IPR003690 GO:0003690|GO:0006355
Vivi378g00003 500 SMART mt_12 338 369 IPR003690 GO:0003690|GO:0006355
Vivi378g00003 500 SMART mt_12 408 439 IPR003690 GO:0003690|GO:0006355
Vivi378g00003 500 Coils Coil 422 442 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vivi378g00003 mTERF 3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi378g00003 - - vvo:131626180 736.102