Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi376g00038 ATGGTTCCGCCTCCACCACCGGTGGACAACGGCGAATCCACCGCAGCTGTTACAATTTCAACCCCCGCTATGGACTCCCAGAGATCTATTCCGACGCCGTTTCTCACCAAAACCTATAACCTAGTTGAGGATAAATCCATCGACGACGTTATTTCATGGAACGAAGATGGATCCACCTTCATCGTTTGGAACCCTACCGTTTTCGCTAGTAATTTGCTTCCAAAATATTTCAAACACAATAATTTCTCAAGCTTCGTTCGTCAACTCAATACTTATGGATTTAGAAAAGTAGTACCTGATCGCTGGGAATTCTCAAATGATTGTTTCCGAAGAGGTGAGAAAAGGCTTCTATGCGAAATTCAACGCCGGAAAATCTGTTCTGCGGTCACGACGTCTGTTTCCGCTGTTACTGCGGCGGTGGAGACCCCGACGGTTCCGGTTGCGGTTGCTTCACCTATGCCGCTGACTGTAATACCTATGGCGATGCCGATGGTTTCACCGTCGAACTCCGGTGAAGAACAGGTGATATCGTCGAGTTCGTCTCCGTCGCGAGCGCCATCGGAGCTTCTCGACGAGAACGAGAGATTGAGGAAAGAGAATGTTATGCTGAACAAGGAACTTGCTGAGATGAGATTGCTTTGCAACAATATATACACTCTCATGTCAAGTTATGCAAACAACAACAACAACAATAGCAATAACAATAGCAGTTATAATAATAATAATCAAACGGACGGCGGCACGCAAGGAAGCAGAGAGTCCGGTATGACGGCGGTGAGACCGTTGGATTTGATGCCGGCGGTGAAACGAAGCTCCGGCATGGAAGAGGTGAATCCGAAGCTGTTTGGTGTCGCTATTGGAACGAAGCGAATGAGAGAAAACGGTTGCGAAAGAGGAGATAGAGGAAGAGATGATACACTGTTGCGACTACATCAACCAGGTTCTCCGGATGTGAAATCAGAGCCGTTAGATTGTCTGGATAGTGATCAAACGCCATGGGTGAACCGGTGTACAAGAGCGAACGAGAGTTTATGTAAATGA 1041 0.4717 MVPPPPPVDNGESTAAVTISTPAMDSQRSIPTPFLTKTYNLVEDKSIDDVISWNEDGSTFIVWNPTVFASNLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFRRGEKRLLCEIQRRKICSAVTTSVSAVTAAVETPTVPVAVASPMPLTVIPMAMPMVSPSNSGEEQVISSSSSPSRAPSELLDENERLRKENVMLNKELAEMRLLCNNIYTLMSSYANNNNNNSNNNSSYNNNNQTDGGTQGSRESGMTAVRPLDLMPAVKRSSGMEEVNPKLFGVAIGTKRMRENGCERGDRGRDDTLLRLHQPGSPDVKSEPLDCLDSDQTPWVNRCTRANESLCK 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi376g00038 346 MobiDBLite consensus disorder prediction 293 321 - -
Vivi376g00038 346 Gene3D - 26 124 IPR036388 -
Vivi376g00038 346 MobiDBLite consensus disorder prediction 167 187 - -
Vivi376g00038 346 SUPERFAMILY "Winged helix" DNA-binding domain 31 123 IPR036390 -
Vivi376g00038 346 MobiDBLite consensus disorder prediction 166 193 - -
Vivi376g00038 346 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 24 254 IPR027725 -
Vivi376g00038 346 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi376g00038 346 PRINTS Heat shock factor (HSF) domain signature 34 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi376g00038 346 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi376g00038 346 ProSitePatterns HSF-type DNA-binding domain signature. 73 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi376g00038 346 MobiDBLite consensus disorder prediction 228 254 - -
Vivi376g00038 346 Pfam HSF-type DNA-binding 34 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi376g00038 346 MobiDBLite consensus disorder prediction 293 310 - -
Vivi376g00038 346 SMART hsfneu3 30 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi376g00038 346 FunFam Heat stress transcription factor B-4 26 124 - -
Vivi376g00038 346 Coils Coil 193 213 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi376g00038 6 345 HSF AT5G62020 45.278 1.03e-88 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi376g00038 HSF_DNA-bind 1.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi376g00038 K09419 - gmx:100812267 402.905