Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi375g00006 ATGGTTATATTAGTGGGAAACGTGCAAGGGACAATAAGTTCTCTTGCTTCACCAATGAGTTTAGGGAGTTTCATTGGTGCAAGTAGTTCACATTCTGTTGTTAGAAGAGTTTCTCTTTCTAGAGGGAATTGTGTTAGAGGGAAAAAAAGATGGCATTGTGTTTCTTTGTCTGTTTGTAGATATTCTGTTACCACTACTGATTTTGTTGCTGACCAAGGGAATCCGGTTTCCTTTGATTCTTCTAACAATGGTGATAGTGATAAAGGTGGTGGTGGTGGTGGTGGTGCTAGTGCTAGTTTTGGACTTAAACCTCCTCCTAGGCCTGTGTTGAAGCCCTCTGATAATGACGCGGTTTTAGGATCGGGTTCGTTGAGGAATGGTCAGGGTTCGGATAATGTGGATGAGAGGAATAAGGTGATTGAATCGCTTGGAGATGTTTTGGAGAAGGCTGAAAAGCTTGAAAATTCTAAGCTGGATGGGGGAAGAAGTAATGGTTCGGTAAATAAACCACCGGCTAGACCTGAGATAAATGATAAACCTAAGGATGTTAGACCTGTGAGTTCGTTACAGAAACATAAGTCTAAGACGTTGAAGAGTATATGGCGTAAAGGGGATTCGGTTGCGAATGTGCAAAAGGTTGTGAAGGAAGTTTATAGGCCTAGTGTCAAGAGTAGTGAAGTGGGGGAATCTGTAATTGGGGGAGGGGAGAAGGTAGCATCTGAGTCTCGTGATCTTCAGCCTCCTTTAAGGCCTCAACCGACGTTACAATCTAGGCCTTCTATTGCCCCGCCTCCGCCGCCGCCTGTTAAAAAAGCCGTTATCTTGAAGGATGATAAAGGGCAAGGAGAAACGCCTGTTAAGCCTAAAGAAAAAAAGGCGCCTATCTTGATTGATAAGTTTGCTTCGAAGAAACCGGCAGCTGACCCTGCGATGGCTCGAGCAGTTGTAGCAGCGCCTTCGAGACCAGGGAGGGCCCCTCCCCAAGGAAGGTTTAAAGATGATATCCGGAGGAAAGGTGCTTCGTTTGGGGCAGGACCAAGAAGACGGGTATTCAATAAGGATGGGGTTCCTGATAAGGACACTCGTGGTGCTACAAGAAAAGGAAGGAAATGGAGTAAAGCGAGTCGTAGGGCTCTACGGCTTCAGGCTGCCAGGGATGCTGCTCCGGTTAAAGTTGAAATTCTAGAGGTCAGCGACCAAGGTATGCTGGTGGAAGAGTTGGCATTCAATTTGGCGATCACCGAAGGTGAAATCCTCGGTTCTCTATACTCCAAGGGGGTTAAACCAGATGGGGTACAAACTCTAGACAAAGACATGGTGAAGATGATATGTAAAGATTATGAAGTGGAAGTTATCGATGCCGATCCTTTCACAGTTGAAGGATTAGTGAATAGAAGGGAAATTCTCGAGGAAGATGACCTCGACAAACTCAAAGATAGGCCTCCTGTTATTACTATCATGGGCCATGTTGATCACGGCAAGACAACTCTTTTGGATTATATACGGAAGACCAAGGTAGCGGCTTCTGAAGCTGGTGGGATCACACAGGGAATCGGAGCATATAAAGTGCAAGTACCTTTTGATGGCAAAACGCTGCCGTGTGTTTTTCTCGACACTCCTGGGCACGAGGCATTTGGGGCAATGAGAGCCCGTGGAGCAAGCGTAACAGACATTGCTATTATCGTTGTGGCTGCTGATGATGGTATTCGTCCTCAAACAAAAGAAGCTATAGCTCACGCCAAAGCAGCAGGAGTACCCTTAATCATTGCTATTAACAAGATAGATAAAGACGGAGCAAATCCAGATCGAGTTATGCAAGAGCTATCTTCCATTGGTTTGATGTCAGAAGACTGGGGTGGCGACATCCCGATGGTTCAGATAAGTGCTCTTCAAGGGGAAAATGTAGATGATCTTTTGGAAACAATTATGCTTGTTGCCGAGTTGCAAGAACTGAAAGCTAATCCTGATAGAAGTGCGAAGGGCACAGTCATTGAGGCAGGCTTAGATAAATCAAAAGGACCGTTTGCGACATTTATTATCCAGAATGGAACACTCAGAAGGGGTGATGTAGTAGTCTGCGGAGGAGCTTTTGGAAAGGTAAGAGCTTTATTCGACGATGGTGGAAAGCGTGTCGATGAAGCTACACCTTCTATACCTATCCAGGTTATCGGATTGAATAATGTTCCAGTTGCTGGTGATGTATTTGAGGTTGTTGAATCCCTTGATATTGCACGTGAAAAGGCAGAGTCTCGTGTTATGTCATTGCGAGATGAACGTATTTCAGCAAAGATGGGAGATGGCAAGGTCACTCTTTCTTCGTTAGCTTCTGCAGTTTCGTCAGGAAAGCTTTCTGGACTAGACTTGCACCAATTGAATATTATTTTGAAGGTTGATCTTCAGGGATCCATTGAAGCCGTCAAACAAGCGCTGCAGGTGCTACCGCAAGATAATGTCACGCTGAAGTTTTTGATGGAAACAACCGGTGATGTAAGCACAAGTGATGTTGACCTTGCCGCAGCAAGCAAAGCTATTATTTTTGGATTTAATGTCAAAGCACCAGGCTCTGTAAAAAGCTATGCAGATAATAAAGGTGTTGAGATACGATTATATAAAGTTATTTATGAATTAATTGACGATGTGCGAAAAGCAATGGAAGGACTCCTCGATTCTGTTGAGGATCAAGTATCAATTGGCTCGGCAGAATTACGGGCCGTATTCAGAAGTGGTAGTGCTCGCGTTGCTGGATGCATGGTTACAGAAGGAAAGGTTACAAAAGGCTGTGGCATTCGAGTCGTTCGAAAGGGAAAAGTAGTTCATGTTGGTATTCTCGATTCTTTGAGACGGGTGAAAGAGATTGTTAAAGAGGTAAACGCCGGTCTCGAGTGCGGGCTTGCGTTAGAAGACTACGATGAGTGGGAAGAGGGTGATATTCTTGAAGCCTTCAACACAGTCGAGAAGAGAAGAACCCTCGAAGAAGCCTCAGCATCAATGGCAGCCGCAGTGGAAGGAGTAGAAGATAAACAACAGAACGAACAACGAAGCGAGTAA 3048 0.4495 MVILVGNVQGTISSLASPMSLGSFIGASSSHSVVRRVSLSRGNCVRGKKRWHCVSLSVCRYSVTTTDFVADQGNPVSFDSSNNGDSDKGGGGGGGASASFGLKPPPRPVLKPSDNDAVLGSGSLRNGQGSDNVDERNKVIESLGDVLEKAEKLENSKLDGGRSNGSVNKPPARPEINDKPKDVRPVSSLQKHKSKTLKSIWRKGDSVANVQKVVKEVYRPSVKSSEVGESVIGGGEKVASESRDLQPPLRPQPTLQSRPSIAPPPPPPVKKAVILKDDKGQGETPVKPKEKKAPILIDKFASKKPAADPAMARAVVAAPSRPGRAPPQGRFKDDIRRKGASFGAGPRRRVFNKDGVPDKDTRGATRKGRKWSKASRRALRLQAARDAAPVKVEILEVSDQGMLVEELAFNLAITEGEILGSLYSKGVKPDGVQTLDKDMVKMICKDYEVEVIDADPFTVEGLVNRREILEEDDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKTKVAASEAGGITQGIGAYKVQVPFDGKTLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTKEAIAHAKAAGVPLIIAINKIDKDGANPDRVMQELSSIGLMSEDWGGDIPMVQISALQGENVDDLLETIMLVAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIIQNGTLRRGDVVVCGGAFGKVRALFDDGGKRVDEATPSIPIQVIGLNNVPVAGDVFEVVESLDIAREKAESRVMSLRDERISAKMGDGKVTLSSLASAVSSGKLSGLDLHQLNIILKVDLQGSIEAVKQALQVLPQDNVTLKFLMETTGDVSTSDVDLAAASKAIIFGFNVKAPGSVKSYADNKGVEIRLYKVIYELIDDVRKAMEGLLDSVEDQVSIGSAELRAVFRSGSARVAGCMVTEGKVTKGCGIRVVRKGKVVHVGILDSLRRVKEIVKEVNAGLECGLALEDYDEWEEGDILEAFNTVEKRRTLEEASASMAAAVEGVEDKQQNEQRSE 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi375g00006 1015 FunFam Translation initiation factor IF-2 892 989 - -
Vivi375g00006 1015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 471 655 IPR027417 -
Vivi375g00006 1015 MobiDBLite consensus disorder prediction 351 367 - -
Vivi375g00006 1015 Pfam Elongation factor Tu GTP binding domain 484 644 IPR000795 GO:0003924|GO:0005525
Vivi375g00006 1015 Pfam Translation-initiation factor 2 787 880 IPR023115 -
Vivi375g00006 1015 NCBIfam translation initiation factor IF-2 400 990 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vivi375g00006 1015 Gene3D - 787 891 IPR036925 -
Vivi375g00006 1015 MobiDBLite consensus disorder prediction 72 87 - -
Vivi375g00006 1015 CDD IF2_mtIF2_II 659 751 IPR044145 -
Vivi375g00006 1015 Hamap Translation initiation factor IF-2 [infB]. 7 988 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vivi375g00006 1015 NCBIfam small GTP-binding protein domain 481 642 IPR005225 GO:0005525
Vivi375g00006 1015 ProSitePatterns Initiation factor 2 signature. 941 963 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vivi375g00006 1015 Gene3D Translation factors 893 989 - -
Vivi375g00006 1015 CDD mtIF2_IVc 898 980 - -
Vivi375g00006 1015 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 196 996 IPR015760 -
Vivi375g00006 1015 SUPERFAMILY Translation proteins 895 988 IPR009000 -
Vivi375g00006 1015 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 786 898 IPR036925 -
Vivi375g00006 1015 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 479 652 IPR000795 GO:0003924|GO:0005525
Vivi375g00006 1015 FunFam Translation initiation factor IF-2 787 891 - -
Vivi375g00006 1015 MobiDBLite consensus disorder prediction 315 374 - -
Vivi375g00006 1015 MobiDBLite consensus disorder prediction 272 296 - -
Vivi375g00006 1015 MobiDBLite consensus disorder prediction 72 135 - -
Vivi375g00006 1015 Gene3D - 476 654 IPR027417 -
Vivi375g00006 1015 MobiDBLite consensus disorder prediction 327 341 - -
Vivi375g00006 1015 CDD IF2_eIF5B 482 648 - -
Vivi375g00006 1015 SUPERFAMILY Translation proteins 655 739 IPR009000 -
Vivi375g00006 1015 Gene3D Translation factors 655 770 - -
Vivi375g00006 1015 FunFam Translation initiation factor IF-2 655 773 - -
Vivi375g00006 1015 FunFam Translation initiation factor IF-2 476 654 - -
Vivi375g00006 1015 PRINTS GTP-binding elongation factor signature 587 596 IPR000795 GO:0003924|GO:0005525
Vivi375g00006 1015 PRINTS GTP-binding elongation factor signature 483 496 IPR000795 GO:0003924|GO:0005525
Vivi375g00006 1015 PRINTS GTP-binding elongation factor signature 551 562 IPR000795 GO:0003924|GO:0005525
Vivi375g00006 1015 PRINTS GTP-binding elongation factor signature 535 545 IPR000795 GO:0003924|GO:0005525
Vivi375g00006 1015 MobiDBLite consensus disorder prediction 153 197 - -
Vivi375g00006 1015 MobiDBLite consensus disorder prediction 252 271 - -
Vivi375g00006 1015 MobiDBLite consensus disorder prediction 174 189 - -
Vivi375g00006 1015 Coils Coil 738 758 - -
Vivi375g00006 1015 MobiDBLite consensus disorder prediction 223 296 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi375g00006 480 881 Eukaryotic Initiation Factors Gene Family AT1G21160 28.903 1.33e-29 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi375g00006 K02519 - gmx:100778924 1380.93