Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi375g00002 ATGGAAGAACCAACATTTTTGTTTCCACCACCAGACTCCGACCTCGACCTCAGTTTCACCAGCACCACCACCGACCGCACCTTCACCTCCTCCAGCGCCCGCACCAGCTTAGCCCGCACAAGCAGCCTCGCTCTCAGCTTCAACGACCGTCTCTCCACCGCCTCAGCCGCTGCTGGAGCCACCCTTTCCTCCTCAATCACACGCCGCCCCCACCGTAGCTCTGATCCCAACTGGACCGCAATCAAGGCCGCAACAAATCTCTCCTCCGACGGCCGTCTCCATCTCCGTCATATCAAGCTCCTCCGCCACCTCGGCTCCGGAGACCTCGGCCGTGTTTACCTCTGCCGCCTCCGCGACTACGACGGTGCAAACTTCGCTCTTAAAGTTGTTGATAAAGACCTTCTCACTCTCAAGAAATCAACTCACGCGGAAACGGAAGCAGAAATCCTTCATATGCTGGATCATCCTTTTCTCCCGACTCTCTACGCGCGTATCGACGTTTCTCACTACTCCTGCCTCCTGATCGACTACTGCCCCGGCGGAGACCTCCACTCTCTCCTCCGTAAACAACCGGGAAACCGCTTTACACTCTCCGCAGCGCGTTTCTTCGCTGCGGAGATCCTCGTCGCGCTCGAGTATCTCCACGCCCTCGGCGTGGTTTACCGCGACTTAAAACCCGAGAATGTTCTTCTGCGTGAAGACGGACACGTCATGCTTTCGGATTTCGATCTCTGCTTCAAAGCTGACGTTGCACCCACATTTGAATTTGCAGCCAATCATAAAACTCACGTGGACCCCACTTACGGTTGTTTCAGTTATAACATATCACAATCAAAATCAAGATCAAGAGTAACGGCTGAGTTTGTTGCAGAACCAACCATGGCGTTCTCACGGTCGTGCGTGGGAACGCACGAGTATTTAGCGCCGGAGCTTGTTTCTGGCAACGGTCACGGTAATGGCGTAGATTGGTGGGCGTTTGGTGTTTTTATCTACGAGCTTTTATACGGGACGACACCGTTTAAGGGGTGTAACAAAGAGGGCACGCTGCGCAATATAGCGTCTAACGCGGATGTTAAGTTCAATGTGACGGAGAATGAGGAAGTCGGAATGATTGAAGCGAGAGACTTGATAGAGAAGTTGTTAGTGAAGGATCCGAGGAGGAGGCTCGGGTGCGCCAGGGGCGCAACGGATATTAAACAGCACCCGTTTTTCGACGGGATTAAGTGGCCTTTGATAAGGAATTATAAGGCACCTGAAGTTAAGGGATTGATGAGGAGGAAAAAATCGGATTCGAGTTTGAGTTGTGGGAGTAGTAAGAGGAAGAGAGGGTGGTGGAAGAGACTTGGAGGTGTATTGAGAAATAAAGGAGGTAGATTTGAGTTACTTTCTAATTGTAGTAATAATAATAGTTATTATTGTTATGTTAATAATAGTAATAAGATTAGGTAA 1449 0.5066 MEEPTFLFPPPDSDLDLSFTSTTTDRTFTSSSARTSLARTSSLALSFNDRLSTASAAAGATLSSSITRRPHRSSDPNWTAIKAATNLSSDGRLHLRHIKLLRHLGSGDLGRVYLCRLRDYDGANFALKVVDKDLLTLKKSTHAETEAEILHMLDHPFLPTLYARIDVSHYSCLLIDYCPGGDLHSLLRKQPGNRFTLSAARFFAAEILVALEYLHALGVVYRDLKPENVLLREDGHVMLSDFDLCFKADVAPTFEFAANHKTHVDPTYGCFSYNISQSKSRSRVTAEFVAEPTMAFSRSCVGTHEYLAPELVSGNGHGNGVDWWAFGVFIYELLYGTTPFKGCNKEGTLRNIASNADVKFNVTENEEVGMIEARDLIEKLLVKDPRRRLGCARGATDIKQHPFFDGIKWPLIRNYKAPEVKGLMRRKKSDSSLSCGSSKRKRGWWKRLGGVLRNKGGRFELLSNCSNNNSYYCYVNNSNKIR 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi375g00002 482 CDD STKc_phototropin_like 96 420 - -
Vivi375g00002 482 SMART serkin_6 98 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi375g00002 482 PANTHER FLIPPASE KINASE 1-RELATED 35 422 - -
Vivi375g00002 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Vivi375g00002 482 ProSiteProfiles Protein kinase domain profile. 98 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi375g00002 482 SUPERFAMILY Protein kinase-like (PK-like) 75 418 IPR011009 -
Vivi375g00002 482 Gene3D Phosphorylase Kinase; domain 1 97 181 - -
Vivi375g00002 482 Pfam Protein kinase domain 100 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi375g00002 482 Gene3D Transferase(Phosphotransferase) domain 1 297 416 - -
Vivi375g00002 482 Gene3D Transferase(Phosphotransferase) domain 1 182 248 - -
Vivi375g00002 482 FunFam Serine/threonine-protein kinase OXI1 295 422 - -
Vivi375g00002 482 FunFam Serine/threonine-protein kinase OXI1 182 250 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi375g00002 1 478 AGC Kinase Gene Family AT3G14370 62.602 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vivi375g00002 Pkinase 2.5e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi375g00002 - - lja:Lj0g3v0200189.1 666.766