Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi374g00028 | ATGTCTCATCATTCTTCTACTTCTCTTTCAAGAAAGAGAAAGTCTCTTTCAGAAGACAGCCATGGTGAAAAGAGAAAGAAAGCAACCACCTCTCAATCCTCAAAAAGCATATGCGGTATATGTTTTGATTCTGTAAAAGACTATAAAATCTTCACAAACACTTCATGCAATCACCCCTTTTGTACTAAATGCATATCCAAGTATGTTAAACTTCAACGAAAACAAAAAGTGGTAAAACTCAGTTGTCCGGATCCAGAATGTTCCGTGGAACTGAAACCAGAACAATTTCAATCTATTTTACGTAAAGACCTCATTGTTGAATGGGAATCTGCAATTTGCGAGTCTTCGATTTCTTCGAAGCAAAAGATTTACTGTCCTTATAAGAATTGTTCTCTTATGATGGTGAATGACGGTGTCGAAGTTGTTACAAGTTGCGAATGTCCTTCTTGTCATAGACTATTCTGTGCACAATGTAATGTTCCATGGCACGCTGATATGAATTGCCGGGAATGTCGGGAATATCAGAACTCGAAGCCGGTTCAAGAAGAAAAACAATTGGATGAGAAATTTTTAGAGTTGGCTAAAACAAAAAATTGGCAGAAATGTCCAGGATGTTCTATGTATGTCCAGAAAAGGGGTGGATGTAATCACATGTCTTGCAGTACTGGATTTTAA | 675 | 0.3733 | MSHHSSTSLSRKRKSLSEDSHGEKRKKATTSQSSKSICGICFDSVKDYKIFTNTSCNHPFCTKCISKYVKLQRKQKVVKLSCPDPECSVELKPEQFQSILRKDLIVEWESAICESSISSKQKIYCPYKNCSLMMVNDGVEVVTSCECPSCHRLFCAQCNVPWHADMNCRECREYQNSKPVQEEKQLDEKFLELAKTKNWQKCPGCSMYVQKRGGCNHMSCSTGF | 224 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi374g00028 | 224 | ProSiteProfiles | TRIAD supradomain profile. | 34 | 224 | IPR044066 | - | |
| Vivi374g00028 | 224 | FunFam | RBR-type E3 ubiquitin transferase | 33 | 119 | - | - | |
| Vivi374g00028 | 224 | MobiDBLite | consensus disorder prediction | 11 | 28 | - | - | |
| Vivi374g00028 | 224 | SMART | ibrneu5 | 106 | 168 | IPR002867 | GO:0008270 | |
| Vivi374g00028 | 224 | Gene3D | - | 170 | 224 | - | - | |
| Vivi374g00028 | 224 | Pfam | Zinc finger, C3HC4 type (RING finger) | 38 | 83 | IPR018957 | GO:0046872 | |
| Vivi374g00028 | 224 | SUPERFAMILY | RING/U-box | 34 | 117 | - | - | |
| Vivi374g00028 | 224 | ProSiteProfiles | Zinc finger RING-type profile. | 38 | 83 | IPR001841 | - | |
| Vivi374g00028 | 224 | SUPERFAMILY | RING/U-box | 184 | 221 | - | - | |
| Vivi374g00028 | 224 | CDD | BRcat_RBR_unk | 119 | 170 | - | - | |
| Vivi374g00028 | 224 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Vivi374g00028 | 224 | Pfam | IBR domain, a half RING-finger domain | 110 | 168 | IPR002867 | GO:0008270 | |
| Vivi374g00028 | 224 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 23 | 220 | IPR031127 | GO:0004842|GO:0016567 | |
| Vivi374g00028 | 224 | ProSitePatterns | Zinc finger RING-type signature. | 56 | 65 | IPR017907 | - | |
| Vivi374g00028 | 224 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 31 | 119 | IPR013083 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi374g00028 | 38 | 220 | C3H Transcription Factor Family | AT2G19610 | 28.125 | 1.93e-19 | 84.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi374g00028 | K11975 | - | vvo:131630288 | 330.102 |