Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi374g00027 | ATGGCGGTCTTTCCAATCTCATTATTAATAAATTACATTCTTCCATCCTTCATCCTGATATGTATAGGTAACAACTTCCGTTCAACAAACAATGAAGCAAATGGAACTCAAAATACAATCAAGAGAAAATCTGTTGAAGCAGACAGCGATAATGAAAAGAAGAAAGCAACAACTGGTTATCAAGGTCTTCCCATGACTCAGTCTGGTACTTCTCATTCAACAAAAACTATTCAAAATACAAAGAAGAGAAAATCTCTTGAAGCAGATCGCGATAATGAAAAGAAGAAAGCAACAACCGGTTATCAAGGTTTTCCCGTGACTCGGTCTGGTACTTCTCATTCAACAAAAACTATTCAAAATACAAAGAAGAGAAAATCTCTTGGAGCAGATAGCGATAATGAAAAGAAGAAAACAAAGAAAGCAACAACCAGTTATCAAGGCAAGCCCTCAAAAAGATTCAGTTGCGGCATATGTTTTGATTCTGTAAAAGAATCTAAAATCTTCACAAACACTTCATGCAATCATCCCTTTTGTACTAAATGCATATCCAAGTATGTCAAACTTCAAAGAAAACAAAAAGTGGTGAAACTCACCTGTCCGGATCCACAATGTTCCTTGGAACTCAAACCACAACATTTGCAATCCATTTTACCTAAAGAACTTATTGTTGAATGGGAATCTGCAATTTATGAGTCTTCGATTTCTTTGAAGAAAAAAATTTACTGTCCTTATAAGAATTGTTCTCTTATGTTGGTGAATGATGGGAAAGAAGTTGTTACAAGCTGTGAATGTCCTTCTTGTCATAGACTATTCTGTGCACAATGCAAGGTTCCATGGCACGCAGACATGAGTTGCCGGAGATTTCAGAAGTCGGCAAAGCGTCGAGATGAAAAACAATTGGATGAGAAATTTATGGAATTAGCTAAAAGAAACAAGTGGCAGAAGTGTCCCAAATGCTGTATGCATGTTCAGAGAAATGGTGGATGTGAGCACATGTCATGCAGGTGTGGATGTAACTTCTGCTACAAGTGTGGGAAGGATTGGAAGCATGGACATATCTGTAAAACATGTAGATCATAA | 1080 | 0.3694 | MAVFPISLLINYILPSFILICIGNNFRSTNNEANGTQNTIKRKSVEADSDNEKKKATTGYQGLPMTQSGTSHSTKTIQNTKKRKSLEADRDNEKKKATTGYQGFPVTRSGTSHSTKTIQNTKKRKSLGADSDNEKKKTKKATTSYQGKPSKRFSCGICFDSVKESKIFTNTSCNHPFCTKCISKYVKLQRKQKVVKLTCPDPQCSLELKPQHLQSILPKELIVEWESAIYESSISLKKKIYCPYKNCSLMLVNDGKEVVTSCECPSCHRLFCAQCKVPWHADMSCRRFQKSAKRRDEKQLDEKFMELAKRNKWQKCPKCCMHVQRNGGCEHMSCRCGCNFCYKCGKDWKHGHICKTCRS | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi374g00027 | 359 | Gene3D | - | 283 | 359 | - | - | |
| Vivi374g00027 | 359 | SUPERFAMILY | RING/U-box | 150 | 233 | - | - | |
| Vivi374g00027 | 359 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 90 | 348 | IPR031127 | GO:0004842|GO:0016567 | |
| Vivi374g00027 | 359 | ProSiteProfiles | TRIAD supradomain profile. | 151 | 359 | IPR044066 | - | |
| Vivi374g00027 | 359 | Pfam | Zinc finger, C3HC4 type (RING finger) | 155 | 200 | IPR018957 | GO:0046872 | |
| Vivi374g00027 | 359 | MobiDBLite | consensus disorder prediction | 30 | 145 | - | - | |
| Vivi374g00027 | 359 | SUPERFAMILY | RING/U-box | 236 | 290 | - | - | |
| Vivi374g00027 | 359 | ProSitePatterns | Zinc finger RING-type signature. | 173 | 182 | IPR017907 | - | |
| Vivi374g00027 | 359 | CDD | BRcat_RBR_unk | 237 | 288 | - | - | |
| Vivi374g00027 | 359 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 235 | IPR013083 | - | |
| Vivi374g00027 | 359 | FunFam | RBR-type E3 ubiquitin transferase | 150 | 236 | - | - | |
| Vivi374g00027 | 359 | SMART | ibrneu5 | 223 | 285 | IPR002867 | GO:0008270 | |
| Vivi374g00027 | 359 | SMART | ibrneu5 | 298 | 357 | IPR002867 | GO:0008270 | |
| Vivi374g00027 | 359 | SUPERFAMILY | RING/U-box | 300 | 358 | - | - | |
| Vivi374g00027 | 359 | MobiDBLite | consensus disorder prediction | 80 | 97 | - | - | |
| Vivi374g00027 | 359 | MobiDBLite | consensus disorder prediction | 123 | 141 | - | - | |
| Vivi374g00027 | 359 | MobiDBLite | consensus disorder prediction | 60 | 76 | - | - | |
| Vivi374g00027 | 359 | MobiDBLite | consensus disorder prediction | 102 | 122 | - | - | |
| Vivi374g00027 | 359 | CDD | Rcat_RBR_unk | 312 | 348 | - | - | |
| Vivi374g00027 | 359 | ProSiteProfiles | Zinc finger RING-type profile. | 155 | 200 | IPR001841 | - | |
| Vivi374g00027 | 359 | Pfam | IBR domain, a half RING-finger domain | 230 | 285 | IPR002867 | GO:0008270 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi374g00027 | 154 | 345 | C3H Transcription Factor Family | AT2G19610 | 29.064 | 1.92e-22 | 95.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi374g00027 | K11975 | - | vvo:131630288 | 752.281 |