Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi374g00026 ATGCAAAATTCAAAGAAGAGAAAATCTCTTTCAGAAGACAACGATGATGAAAACAGAAAGAAAGCAACCACTAGTCGTCACCTTCAATCTCTTTCAGCAAAAGAATTGCAAATCATAACCAAAAGAAAACCTCTTTCAGAAGACCGTTATGAAAAGAACAAGAAGACGAACAAAGCAACTACCAGTCGTCAACCCTCAAAAAGAAGATGCGGTATATGTTTTGATTCCGTAACTGACTCTGAAATATTCACAAACACTTCATGCAACCATCCCTTTTGTACTAGATGCATATCCAAGTATGTCAAACTTCAAAGAAAAGACAAAGTGGTGAAACTCAACTGTCCAGATCCACAATGTTCTTTAAAACTCAAACCACAACATTTGGAATCCATTTTACCTAAAGAACTTATTGTTGAATGGGAATCTGCAATTTACGAGTCTTCGATTTCTTTGAAGAAAAAGATTTACTGTCCTTATAAGAATTGTTCTGTTATGATGGTGAATGACGGTGAAGAAGTTGTTACAAGTTGTGAATGTCCTTCTTGTCATAGACTATTCTGTGCACAATGTAAGGTTCCATGGCACGTTGATATGAGTTGCCGGAGATTTCAGAAGTCGACAAAGGGTCAACACGAAAAAGAATTGGATGAGAAATTTATGGAATTGGCTAAAAGAAAAAAGTGGCAGAAATGTCCCAAATGTTCTATGCATGTTCAGAGAAATGGTGGATGTGAACACATTTCGTGCAGGTGTGGATGTAACTTCTGCTACAAGTGTGGTAAGGATTGGATTCATGGACATATATGCAAACATTCGAGGTAA 822 0.3686 MQNSKKRKSLSEDNDDENRKKATTSRHLQSLSAKELQIITKRKPLSEDRYEKNKKTNKATTSRQPSKRRCGICFDSVTDSEIFTNTSCNHPFCTRCISKYVKLQRKDKVVKLNCPDPQCSLKLKPQHLESILPKELIVEWESAIYESSISLKKKIYCPYKNCSVMMVNDGEEVVTSCECPSCHRLFCAQCKVPWHVDMSCRRFQKSTKGQHEKELDEKFMELAKRKKWQKCPKCSMHVQRNGGCEHISCRCGCNFCYKCGKDWIHGHICKHSR 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi374g00026 273 Pfam IBR domain, a half RING-finger domain 222 268 IPR002867 GO:0008270
Vivi374g00026 273 Pfam IBR domain, a half RING-finger domain 145 200 IPR002867 GO:0008270
Vivi374g00026 273 SMART ibrneu5 213 269 IPR002867 GO:0008270
Vivi374g00026 273 SMART ibrneu5 138 200 IPR002867 GO:0008270
Vivi374g00026 273 MobiDBLite consensus disorder prediction 40 58 - -
Vivi374g00026 273 Pfam Zinc finger, C3HC4 type (RING finger) 70 115 IPR018957 GO:0046872
Vivi374g00026 273 SUPERFAMILY RING/U-box 68 148 - -
Vivi374g00026 273 ProSiteProfiles TRIAD supradomain profile. 66 273 IPR044066 -
Vivi374g00026 273 ProSiteProfiles Zinc finger RING-type profile. 70 115 IPR001841 -
Vivi374g00026 273 MobiDBLite consensus disorder prediction 1 24 - -
Vivi374g00026 273 FunFam RBR-type E3 ubiquitin transferase 65 151 - -
Vivi374g00026 273 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Vivi374g00026 273 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 24 265 IPR031127 GO:0004842|GO:0016567
Vivi374g00026 273 CDD Rcat_RBR_unk 227 263 - -
Vivi374g00026 273 MobiDBLite consensus disorder prediction 1 63 - -
Vivi374g00026 273 Gene3D - 198 273 - -
Vivi374g00026 273 SUPERFAMILY RING/U-box 151 205 - -
Vivi374g00026 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 150 IPR013083 -
Vivi374g00026 273 CDD BRcat_RBR_unk 152 203 - -
Vivi374g00026 273 SUPERFAMILY RING/U-box 216 270 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi374g00026 70 260 C3H Transcription Factor Family AT2G19610 28.713 1.01e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi374g00026 K11975 - vvo:131658644 532.332