Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi374g00025 ATGTCTTCTCCTTCTTCTACTTCTCTTCCAACAAAGAGAAAGAAAGCAACCACCACTCAGTCCTCAAAAAGTATATGCGGTATATGCTTTGATTCTGTAACTGTCTCTAAAATCTTCACAAACACTTCATGCAACCATCCCTTTTGTACTAGATGCATATCCAAGTATGTCAAACTTCAAAGAAAAGACAAAGTGGTGAAACTCTACTGTCCAGATCCACAATGTTCTTTGAAACTCAAACCACAGCATTTGCAATCCATTTTACCTAAAGAACTTATTGTTGAATGGGAATCTGCAATTTACGAGTCTTCTATTTCTTTGAGGAAAAAGATTTACTGTCCTTATAAGAACTGTTCGGTTATGTTGGTGAATGACGGAGAAGAAGTTGTTACAAGTTGTGAATGTCCTTCTTGTCATAGACTATTCTGTGCACAATGTAAGGTTCCATGGCACGCAGACATGAGTTGCCGGAGATTTCAGAAGTCAACAAAGGGTCAACATGAAAAAGAATTGGATGAGAAATTTATAGAATTGGCTAAAAGAAAAAAGTGGCAGAAATGTCCCAAATGTTCTATGCATGTTCAGAGAAATGGTGGATGTGAACACATTTCGTGCAGGTGTGGATGTAACTTCTGCTACAAGTGTGGTAAGGATTGGATTCACGGACATATATGCAAATATTCCCGGTAA 690 0.3783 MSSPSSTSLPTKRKKATTTQSSKSICGICFDSVTVSKIFTNTSCNHPFCTRCISKYVKLQRKDKVVKLYCPDPQCSLKLKPQHLQSILPKELIVEWESAIYESSISLRKKIYCPYKNCSVMLVNDGEEVVTSCECPSCHRLFCAQCKVPWHADMSCRRFQKSTKGQHEKELDEKFIELAKRKKWQKCPKCSMHVQRNGGCEHISCRCGCNFCYKCGKDWIHGHICKYSR 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi374g00025 229 SUPERFAMILY RING/U-box 172 225 - -
Vivi374g00025 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 108 IPR013083 -
Vivi374g00025 229 SUPERFAMILY RING/U-box 23 104 - -
Vivi374g00025 229 CDD BRcat_RBR_unk 110 159 - -
Vivi374g00025 229 CDD Rcat_RBR_unk 183 219 - -
Vivi374g00025 229 Gene3D - 154 229 - -
Vivi374g00025 229 SMART ibrneu5 94 156 IPR002867 GO:0008270
Vivi374g00025 229 SMART ibrneu5 165 225 IPR002867 GO:0008270
Vivi374g00025 229 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Vivi374g00025 229 Pfam Zinc finger, C3HC4 type (RING finger) 26 71 IPR018957 GO:0046872
Vivi374g00025 229 SUPERFAMILY RING/U-box 107 161 - -
Vivi374g00025 229 FunFam RBR-type E3 ubiquitin transferase 21 107 - -
Vivi374g00025 229 ProSiteProfiles TRIAD supradomain profile. 22 229 IPR044066 -
Vivi374g00025 229 ProSiteProfiles Zinc finger RING-type profile. 26 71 IPR001841 -
Vivi374g00025 229 Pfam IBR domain, a half RING-finger domain 102 156 IPR002867 GO:0008270
Vivi374g00025 229 Pfam IBR domain, a half RING-finger domain 173 224 IPR002867 GO:0008270
Vivi374g00025 229 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 17 220 IPR031127 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi374g00025 26 216 C3H Transcription Factor Family AT2G19610 27.723 5.91e-21 88.6