Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi374g00018 ATGATGAAGTGTGAAATGGGAATTCTTTCTTCTCATGCACCATTTGTTGAAACCAATTGGTTTTTGGAAGATAGAAGCTATAACATTAACAGGAGAGCAACAAAATGGACAGCATCAGAGAACAAACTGTTTGAGAATGCTCTTGCTGTTTATGATAAAGATACGCCGGATCGGTGGGCTAAGGTGGCTGAAATGATACCTGGAAAATCTGTTGTTGATGTGATGAATCAGTATAAGGAATTGGAAGTTGATGTTTGTAATATTGAAGCTGGTTTGGTTCCGATTCCGGGTTATAGTACTAGTACTAGTAGTACTAGTACTGCTACGCCTTTTACCTTGGATTGGGTGAGTTCTTCTGGTTATGATGGGTTTAGAGGGATTAATTCTAAGAGAAGTGGTTCCGGTAGATCGCCGGATCAGGAGAGGAAGAAAGGCGTGCCGTGGACCGAAGAAGAACACAAGTTATTTCTATTGGGTCTGAAAAAGTATGGAAAAGGTGATTGGAGAAACATATCAAGAAACTTTGTGATCACAAGAACACCAACACAAGTCGCAAGCCATGCTCAAAAATATTTCATCCGACAACTCTCCGGCGGCAAAGACAAAAGAAGAGCAAGCATCCATGACATAACAACCGTTAATCTCACAGAAACTTCAAAAGCATCTCCAACTTCAGAAAACATCAAAACATCCACTTCACCGCACCATCATAACCATTCCATGAACATCATCAACAAATATTCCACCGCGAACACAGCATCCGAGATGCATTTTCAGCCGGCTATGATCACAGCATTCAACCCTTCACATGAACAAGTTTTCATGTCTCCTTATGGAGTTAATATGCATAGAAATCCTCTTCATGAGTCTTCTTACTTCGGAACTCAAACACAAAACATGGTCTTTCAAATGCAATCTTCTCAACAACAAAACTATTCACATGCATGA 948 0.4019 MMKCEMGILSSHAPFVETNWFLEDRSYNINRRATKWTASENKLFENALAVYDKDTPDRWAKVAEMIPGKSVVDVMNQYKELEVDVCNIEAGLVPIPGYSTSTSSTSTATPFTLDWVSSSGYDGFRGINSKRSGSGRSPDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETSKASPTSENIKTSTSPHHHNHSMNIINKYSTANTASEMHFQPAMITAFNPSHEQVFMSPYGVNMHRNPLHESSYFGTQTQNMVFQMQSSQQQNYSHA 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi374g00018 315 ProSiteProfiles SANT domain profile. 148 196 IPR017884 -
Vivi374g00018 315 FunFam Transcription factor SRM1 29 95 - -
Vivi374g00018 315 SMART sant 32 84 IPR001005 -
Vivi374g00018 315 SMART sant 144 194 IPR001005 -
Vivi374g00018 315 MobiDBLite consensus disorder prediction 126 147 - -
Vivi374g00018 315 SUPERFAMILY Homeodomain-like 142 195 IPR009057 -
Vivi374g00018 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 196 IPR017930 -
Vivi374g00018 315 FunFam transcription factor MYB1R1 146 197 - -
Vivi374g00018 315 Pfam Myb-like DNA-binding domain 147 192 IPR001005 -
Vivi374g00018 315 Pfam Myb-like DNA-binding domain 35 80 IPR001005 -
Vivi374g00018 315 Gene3D - 29 95 - -
Vivi374g00018 315 MobiDBLite consensus disorder prediction 218 240 - -
Vivi374g00018 315 Gene3D - 146 196 - -
Vivi374g00018 315 CDD SANT 147 192 IPR001005 -
Vivi374g00018 315 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 31 299 IPR043363 -
Vivi374g00018 315 ProSiteProfiles Myb-like domain profile. 28 82 IPR001005 -
Vivi374g00018 315 ProSiteProfiles Myb-like domain profile. 140 192 IPR001005 -
Vivi374g00018 315 CDD SANT 35 81 IPR001005 -
Vivi374g00018 315 SUPERFAMILY Homeodomain-like 28 82 IPR009057 -
Vivi374g00018 315 NCBIfam myb-like DNA-binding domain, SHAQKYF class 143 195 IPR006447 GO:0003677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi374g00018 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi374g00018 - - cam:101514273 472.626