Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi374g00013 ATGAAAACAATTGGATCACACTTTGGTGTTGGTGATGATATGAAAATGGCCAACCACTCTTCTGTAGGTCCTCCTTTGACTGCCATTGATAGATTCTTATGTGGTCAAAGAAGCCATTTCCCTCAAAACATTGATGATGAAAACTTTTGTAGCTTTGGTGCTTCATCAACATATAGTTATATGTGGCCTAATAGTAACAATATGATGACTCAAGAAGGTGGCTTTGTTGATCATCTATTGGGAGATGAAGAGGTGATGAATTGGACACAACAAATTCCTTCATTGTGTGTGGAGAAAGAAGATGTGATCAATGGATTAGGGAATGGTGGTGCAGCAAAAGTGGTGGCAAAAAGACCTAAGAAAGTGTCATCTCTTTCTTTGATCAAAGGACAGTGGAGTGATGAAGAAGACAGGAAATTGTTGAAGTTGGTGAAGCTATATGGTGTAAGAAAATGGTCTCAAATAGCTGAGAAGTTGGAAGGAAGAGCTGGAAAGCAGTGTAGGGAGAGATGGCAAAATCATCTTAGGCCTGATATTAAAAAAGATAGTTGGAGCGAGGAAGAAGAGAAGATCTTAGTAGAATGTCATGGCAAGATGGGAAACCGATGGGCCGAAATCGCGAAGAAAATTCCAGGAAGAACTGAAAATGCAATCAAGAATCATTGGAATGCAACTAAAAGGAGACAAAATTCAAAGAGAAAGAACAAAAGGCCTCAAACCAAAGATGGTAAACCACAATCCTCTATTCTTCAAGACTATATCAAAACCCTAACTCAAAAACCATCCACAACCACTTCATCCATCTCTGAGGACCCTTCCATGGACCAATCTCACCTTGTTTTTCCTAACATGTTTCATGAAAACTCATCGTCATCGTCACTCATAGCTGAATCTTACGACGATGAACTTCTCTTCATGCAACAACTTTTCAAGGTGAATAATAATGTTGAACCTGTACTTAACCAATACTATAAGAACCAATCTACTAGAAATCAGATTCTCTCTGATGTTTCACCTAACAACATGTATTATCCTTACCTTTCACCAATGCTGAATGGATCTCAAAACGAGAATAATATCGAGTTCCACCTCGGAAACATGAATCTTTCAGATGGAAACATGGAGTTGGTTTCTTCTGCTCAGTTTTTCTAA 1152 0.3854 MKTIGSHFGVGDDMKMANHSSVGPPLTAIDRFLCGQRSHFPQNIDDENFCSFGASSTYSYMWPNSNNMMTQEGGFVDHLLGDEEVMNWTQQIPSLCVEKEDVINGLGNGGAAKVVAKRPKKVSSLSLIKGQWSDEEDRKLLKLVKLYGVRKWSQIAEKLEGRAGKQCRERWQNHLRPDIKKDSWSEEEEKILVECHGKMGNRWAEIAKKIPGRTENAIKNHWNATKRRQNSKRKNKRPQTKDGKPQSSILQDYIKTLTQKPSTTTSSISEDPSMDQSHLVFPNMFHENSSSSSLIAESYDDELLFMQQLFKVNNNVEPVLNQYYKNQSTRNQILSDVSPNNMYYPYLSPMLNGSQNENNIEFHLGNMNLSDGNMELVSSAQFF 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi374g00013 383 SMART sant 128 177 IPR001005 -
Vivi374g00013 383 SMART sant 180 228 IPR001005 -
Vivi374g00013 383 Gene3D - 182 250 - -
Vivi374g00013 383 Pfam Myb-like DNA-binding domain 132 190 - -
Vivi374g00013 383 ProSiteProfiles Myb-like domain profile. 124 175 IPR001005 -
Vivi374g00013 383 FunFam Transcriptional activator Myb isoform A 128 181 - -
Vivi374g00013 383 CDD SANT 183 226 IPR001005 -
Vivi374g00013 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 126 179 IPR017930 -
Vivi374g00013 383 MobiDBLite consensus disorder prediction 225 239 - -
Vivi374g00013 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 180 230 IPR017930 -
Vivi374g00013 383 ProSiteProfiles Myb-like domain profile. 176 226 IPR001005 -
Vivi374g00013 383 MobiDBLite consensus disorder prediction 214 249 - -
Vivi374g00013 383 CDD SANT 132 175 IPR001005 -
Vivi374g00013 383 Gene3D - 128 180 - -
Vivi374g00013 383 SUPERFAMILY Homeodomain-like 126 222 IPR009057 -
Vivi374g00013 383 PANTHER MYB PROTEIN-RELATED 108 247 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi374g00013 22 310 MYB Transcription Factor Family AT5G58850 44.127 1.60e-75 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi374g00013 Myb_DNA-bind_6 7.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi374g00013 K09422 - gmx:100786295 357.066