Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi374g00001 | ATGAAGCTCTCACTCTTCGGAAAAAAAGATTCGTCGAAACAACTTTCCTCCCATACCCATGCAGAAAACAAAACATGTGGTATATGCTTTGATCAGAAAACAGATTCTGATATGTTCAAAATAAGGTCCAAACTTTTCCAAAGAAGAAAGTGCAAGCACCTCTTTTGTGTTGATTGCATATGCAAGTATGTAGCTGTACAAATAAATGATAATGCTTATAAGGTGATGTGTCCAGGTCCAAATTGTTGTGTGAAGTTTAAGCCAAAACATTTGCGACACATTTTGCCAAAACAACTTATTGCTAAATGGGAGAATTTAATTTACAAGTCTTTGGCTCCGACGGAGCCAAAGACTTACTGCCCTTATCAGAATTGTTCTGTTTTGTTGGTGAAAGGTAATGACATAAGAGGAGATTTTGCCAACAGTTCTAAGTGCCCTTCGTGTCACAGAAACTTTTGCGCCCGGTGCAAAGTTCCATGGCATTCAGGAATGAATTGTCAGAATTTCCAACAAATGAAAAGGAACGACAAAAATGATTTGGATAACAAGTTTTTGGAGTTGGCCAGAATAGCGAAGTGGAAAAGATGTCCAAATTGCTCAATGTATGTCAAGAGAAGTAGTGGATGTAGTTACATGAAATGCAGGTGTGGATGCAAATTCTGCTACAAGTGTGGGAAGAAACGGCAATATGCACATTCATGCGGTAGTAGATAG | 714 | 0.3852 | MKLSLFGKKDSSKQLSSHTHAENKTCGICFDQKTDSDMFKIRSKLFQRRKCKHLFCVDCICKYVAVQINDNAYKVMCPGPNCCVKFKPKHLRHILPKQLIAKWENLIYKSLAPTEPKTYCPYQNCSVLLVKGNDIRGDFANSSKCPSCHRNFCARCKVPWHSGMNCQNFQQMKRNDKNDLDNKFLELARIAKWKRCPNCSMYVKRSSGCSYMKCRCGCKFCYKCGKKRQYAHSCGSR | 237 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi374g00001 | 237 | CDD | BRcat_RBR_unk | 116 | 169 | - | - | |
| Vivi374g00001 | 237 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 16 | 228 | IPR031127 | GO:0004842|GO:0016567 | |
| Vivi374g00001 | 237 | ProSitePatterns | Zinc finger RING-type signature. | 51 | 60 | IPR017907 | - | |
| Vivi374g00001 | 237 | ProSiteProfiles | TRIAD supradomain profile. | 22 | 237 | IPR044066 | - | |
| Vivi374g00001 | 237 | ProSiteProfiles | Zinc finger RING-type profile. | 26 | 78 | IPR001841 | - | |
| Vivi374g00001 | 237 | Gene3D | - | 164 | 237 | - | - | |
| Vivi374g00001 | 237 | SUPERFAMILY | RING/U-box | 107 | 172 | - | - | |
| Vivi374g00001 | 237 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 20 | 114 | IPR013083 | - | |
| Vivi374g00001 | 237 | SMART | ibrneu5 | 178 | 234 | IPR002867 | GO:0008270 | |
| Vivi374g00001 | 237 | SMART | ibrneu5 | 101 | 166 | IPR002867 | GO:0008270 | |
| Vivi374g00001 | 237 | SUPERFAMILY | RING/U-box | 183 | 234 | - | - | |
| Vivi374g00001 | 237 | SUPERFAMILY | RING/U-box | 22 | 113 | - | - | |
| Vivi374g00001 | 237 | CDD | Rcat_RBR_unk | 192 | 227 | - | - | |
| Vivi374g00001 | 237 | Pfam | IBR domain, a half RING-finger domain | 102 | 166 | IPR002867 | GO:0008270 | |
| Vivi374g00001 | 237 | Pfam | IBR domain, a half RING-finger domain | 189 | 234 | IPR002867 | GO:0008270 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi374g00001 | 21 | 225 | C3H Transcription Factor Family | AT2G19610 | 28.169 | 2.87e-20 | 87.0 |