Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi373g00025 ATGGATGGAAGCTCTTGTGGTGACAAAAATAGTTTGCGAAAAGGCAAGTGGACTCATGAAGAAGACAACAAGTTGATTGCTTATGTAACTAGATATGGCTGCTGGAATTGGCGACAACTACCTAAATTTGCAGGTCTTGAAAGATGTGGAAAGAGTTGTAGATTAAGGTGGTTGAACTATCTAAGACCAGATCTCAAAAGAGGAAACTTTTCTCAACAAGAAGAAGAGACTATCATCAAGCTTCATGAAAAACTTGGTAATAGATGGAGAGTGATTGCTGCAAATTTACCCGGGAGAACAGATAACGAGATAAAGAATCATTGGCACACCAACTTGAAAAAGCGTTTTATAAAGAATAATAAGTCTGAAACTAAACGTGAAACAGAAAAATCCAAAACTTCAAATTCAAATAAACACCCTGCAATGGAAGAAGCCAATAAACTTGAAGGAGCATTAGAAAACAATATTGTTCCAAATATTACAAATCCATTGTCTTCAACCCCATCATCGAGTGGATTCTCTTCCATAACAATGGACACTGCAGCAGCCACAATATCATATGAAAGTTCAATTCTTGATGACTATGAGCTTCCTTTATACATGGATGTTTTGAGTGATAGTTTCTGGACAGAACCATATATGATAGACAATTCATATGTTCCTCCAAATGAAGAAGCTAGCTTATTAACGGTGGGATATGAACATGAATACTTTAGTCCTATGTACGATATTGAACTTTGGAGCAATGGACAATAA 756 0.3611 MDGSSCGDKNSLRKGKWTHEEDNKLIAYVTRYGCWNWRQLPKFAGLERCGKSCRLRWLNYLRPDLKRGNFSQQEEETIIKLHEKLGNRWRVIAANLPGRTDNEIKNHWHTNLKKRFIKNNKSETKRETEKSKTSNSNKHPAMEEANKLEGALENNIVPNITNPLSSTPSSSGFSSITMDTAAATISYESSILDDYELPLYMDVLSDSFWTEPYMIDNSYVPPNEEASLLTVGYEHEYFSPMYDIELWSNGQ 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi373g00025 251 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vivi373g00025 251 CDD SANT 69 112 IPR001005 -
Vivi373g00025 251 FunFam MYB-related transcription factor 13 66 - -
Vivi373g00025 251 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi373g00025 251 CDD SANT 16 61 IPR001005 -
Vivi373g00025 251 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi373g00025 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi373g00025 251 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vivi373g00025 251 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi373g00025 251 Gene3D - 68 144 - -
Vivi373g00025 251 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 179 - -
Vivi373g00025 251 MobiDBLite consensus disorder prediction 116 142 - -
Vivi373g00025 251 Gene3D - 14 66 - -
Vivi373g00025 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi373g00025 251 SMART sant 13 63 IPR001005 -
Vivi373g00025 251 SMART sant 66 114 IPR001005 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi373g00025 1 218 MYB Transcription Factor Family AT2G31180 46.396 1.22e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi373g00025 Myb_DNA-binding 8.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi373g00025 K09422 - mtr:11411430 295.819