LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi373g00022	ATGGTGAGAAGCCCTTGTTGTGACAAAACTGGAATGAGAAAAGGTGCGTGGACTTCTGAAGAAGACAACAAGTTAATTGCTTATGTAACTAGATATGGCTCTTGGAATTGGCGACAACTACCTAAATTTGCAGGTCTTGAAAGGTGTGGGAAGAGTTGTAGACTAAGGTGGTTGAACTATCTAAGACCAGATCTCAAAAGAGGAAACTTTACTCAAGAAGAAGAAGATACTATCATCAAACTTCATGAAAAACTGGGTAATAGATGGATTGTGATTGCTGCAAATTTGCCGGGAAGAACAGATAACGAGATAAAGAACCATTGGCACACAAACTTGAAAAAGCGTTTTATAAAAAATAATAAGTCAGACACTAATAATAGAGCAGGAAACTCCAAAGAAACAAATTCAGATAACCCTACAATGGAAGAAGACAATAAACATGAAGGAGTGTTTGAGAATAGTTGTGGTGGTCCCAATTCTTCAAGTCCATCATCTTCAATCCCATCTTCAAGTGGAACAATGGATACTCCAACAACTACGGAACTATCATATGAAAATTATCTTCTTGATGAGCTTCCTTTAATGGATGCATACATGGATATTTTGAATGATAATTTCTGGACAGAACCATATATGATAGACAATTCATATGTCCCTCCAAGTGAAGATGCTACATTATTACCTGTCTGGTGTGAACAAGGATACTTCAGCAGTCCTGTGGACGATGAACAACTTTGGAGCTATGGAAAATAA	753	0.3718	MVRSPCCDKTGMRKGAWTSEEDNKLIAYVTRYGSWNWRQLPKFAGLERCGKSCRLRWLNYLRPDLKRGNFTQEEEDTIIKLHEKLGNRWIVIAANLPGRTDNEIKNHWHTNLKKRFIKNNKSDTNNRAGNSKETNSDNPTMEEDNKHEGVFENSCGGPNSSSPSSSIPSSSGTMDTPTTTELSYENYLLDELPLMDAYMDILNDNFWTEPYMIDNSYVPPSEDATLLPVWCEQGYFSSPVDDEQLWSYGK	250

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi373g00022	250	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Vivi373g00022	250	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Vivi373g00022	250	MobiDBLite	consensus disorder prediction	122	136	-	-
	Vivi373g00022	250	CDD	SANT	69	112	IPR001005	-
	Vivi373g00022	250	FunFam	MYB-related transcription factor	13	66	-	-
	Vivi373g00022	250	CDD	SANT	16	61	IPR001005	-
	Vivi373g00022	250	Gene3D	-	14	66	-	-
	Vivi373g00022	250	SMART	sant	66	114	IPR001005	-
	Vivi373g00022	250	SMART	sant	13	63	IPR001005	-
	Vivi373g00022	250	MobiDBLite	consensus disorder prediction	154	178	-	-
	Vivi373g00022	250	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	13	61	IPR017930	-
	Vivi373g00022	250	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Vivi373g00022	250	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Vivi373g00022	250	Gene3D	-	68	146	-	-
	Vivi373g00022	250	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Vivi373g00022	250	MobiDBLite	consensus disorder prediction	115	178	-	-
	Vivi373g00022	250	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Vivi373g00022	250	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	174	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi373g00022	1	216	MYB Transcription Factor Family	AT2G31180	49.537	5.86e-64	198

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Vivi373g00022		Myb_DNA-binding	9.2e-13	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi373g00022	K09422		-	mtr:11411430	278.485