Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi364g00030 ATGGATAAAATTAAAATGAAGGTTACAGAGCCTTCCTCATCATCCTCATCAAAGTTGCCATTTCCAACTACTGAACAAGTAATAAAGATCCATGATGTGTTCTTGAGTTTCAGAGGAGAAGATACGCGTGCTTGCTTCACTTCACATCTCTGTACCGCTCTTCAAAATGCCGGAATTAAGGTTTTTATTGACGATAATGACCTTCAAAAAGGAGATCATATTTCACCATCATTACACCTAGCAATCCAGCAGTCTCAGATTTCTATAGTTGTTTTCTCTATAAATTATCCCGATTCACGATGGTGTCTCGATGAATTGGAAAACATAATGGAGTGTCACAGAAGCGACAGACAAGTGGTTGTGCCAGTGTTCTACCATTTAGATCCCTCTGAAGTGCGTAATCAGAGAGGCGAGTTTGGAGAAGCTTTTCAACGTCTTTTGAACAAAATGAAAAAGGATGTAAATTTCGATTTACTGTGTGAAAGGGAATTGGGGTGGAGAGCGACGCTTCATCTGGCGGCTAACATTGCAGGGTTCGTAATACTAAACTCCAGGAATGAAAGTGAGGATATCAAAACTATTGTCGACAAAATTTCATATTTGTTGGACAAGACAGATTTGTTTATTACGCATAATCCCGTGGGAATTGAATCTCGAGTGCAAGATGTGATTCAACTTCTACCCATCCAATCAAATGATGTTCTACTACTAGGGATGTGGGGCATGGGGGGAATTGGAAAAACAACCATTGCAAAAGCCGTTTACAATAAGATTGGCCGCAATTTTAAAGGTAGGAGCTTCCTTGCTAATATTAGGCAAAATGGGAGGAAAATTGATGGACTAGTGGGTTTACAAAAGCAACTTCTATTTGATATCTACAAAGAATCGCCAATCAAGACACAATACATTCAGTCGGGAATAGCCATATTACAAAATAAACCCAATAAAAAGAAAGTACTTATTGTACTTGATGATGTGAGTACGTTAGAGGAAATGAATACTTTTTGTGGAAGTCGTAAATGGTTTGGTCAAGGGAGTATAATAATCATCACAACCAGAGATATGCATTTACTTAATGGGAGAGTTGACCAAATATACAACATGACAATAATGAATGAAAGTGAATCAATTGAGCTTTTTAGTTGGAATGCGTTTAAGAAAGCGAGTCCTACAGATGATTTTAATAGAATTTCCAGAAATGTAGTTGAATATTGCGAGGGATTGCCGCTAGCTCTTGAAGTTCTTGGGTCTTTTTTGTATCATAAGACGGAATCTGAGTGGGAACTTGTATTGGAGAAACTCAAAAGAATTCCTAATAACCAAGTACAGAAGAAGTTAAGAATAAGTTATGATGGTTTAAATGATGACGATGAGCAAGAAATATTTCTTGACATAGCTTGTTTCTTTATTGGGATGGATCAAAACGATGTTATACTTGTATTGAAAGACTGTGGACTTTCTGCTGAAATTGGAATAAGTGTCCTTGTTGAGCGAAGCCTTGTGATTGTTGATGATAAGAACATTCTTGGAATGCATGGTTTGGTGCGAGATATGGGAAGAGAAATTGTTCGTGAGGAATCACCAAAGAGGCCCGAGGAACGTAGCAGGTTGTGGTTTCCTAAGGATGTGATTGATGTACTATCCAGAGAAAATGGAAAATATGGTGTTTTGGGACTGGCTTTGAAGCTTCCTAGAGCTAGAGGAAGATGTTTTAGCACTACAGCTTTTGAGAAGATGGAGAGACTCAGATTCCTTCAACTTGATGAGGTAACACTTATTGGAGATTTTGAATATGTTTCTAAAGATCTTAGATGGCTGTCATGGAATGGATTAAGTCAAATACCTTCAAACTTCCATAAAGAAAATTTAGTTTCCATCGAACTTGAGAACAACAAAGTCAAACTTCTATGGAAGAAGACCCTGAGGATGGAGAAGCTAAAAATTCTCAACCTTAGTCATTCTCACTTTCTCACACGAAGCCCTGACTTTTCAAACATGCCTAATCTTGAAAAGCTAGTACTCAAAGATTGTCCATTGTTGTCTGAGATTTCTCCTAGCGTTGGACATCTCAATAAAATTCTTCTGATAAATTTGGAAGACTGTGTTAGCCTACGTAGCCTCCCAAAAAGCATCTACAAGTCGAAATCTCTGAAAACTCTCCTTCTTTCGGGTTGTTTAAAGATTGACAAGTTGGAAGAAGATAAAATAGAATTTTCAACCACTCTCCTTACATATTACACTGCAATAAAAAGAGTACTCTTTTCAGTAGTAAGTTCAAAAAGCATTGGATATATTTCTAGGTGTTGCTATGAGGGATTTTCACTTGATGCGTTTCCATCTATCATTTGGCCTTGGATGTTGAGATATGCACTGATTTGTATATAA 2385 0.374 MDKIKMKVTEPSSSSSSKLPFPTTEQVIKIHDVFLSFRGEDTRACFTSHLCTALQNAGIKVFIDDNDLQKGDHISPSLHLAIQQSQISIVVFSINYPDSRWCLDELENIMECHRSDRQVVVPVFYHLDPSEVRNQRGEFGEAFQRLLNKMKKDVNFDLLCERELGWRATLHLAANIAGFVILNSRNESEDIKTIVDKISYLLDKTDLFITHNPVGIESRVQDVIQLLPIQSNDVLLLGMWGMGGIGKTTIAKAVYNKIGRNFKGRSFLANIRQNGRKIDGLVGLQKQLLFDIYKESPIKTQYIQSGIAILQNKPNKKKVLIVLDDVSTLEEMNTFCGSRKWFGQGSIIIITTRDMHLLNGRVDQIYNMTIMNESESIELFSWNAFKKASPTDDFNRISRNVVEYCEGLPLALEVLGSFLYHKTESEWELVLEKLKRIPNNQVQKKLRISYDGLNDDDEQEIFLDIACFFIGMDQNDVILVLKDCGLSAEIGISVLVERSLVIVDDKNILGMHGLVRDMGREIVREESPKRPEERSRLWFPKDVIDVLSRENGKYGVLGLALKLPRARGRCFSTTAFEKMERLRFLQLDEVTLIGDFEYVSKDLRWLSWNGLSQIPSNFHKENLVSIELENNKVKLLWKKTLRMEKLKILNLSHSHFLTRSPDFSNMPNLEKLVLKDCPLLSEISPSVGHLNKILLINLEDCVSLRSLPKSIYKSKSLKTLLLSGCLKIDKLEEDKIEFSTTLLTYYTAIKRVLFSVVSSKSIGYISRCCYEGFSLDAFPSIIWPWMLRYALICI 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi364g00030 794 SUPERFAMILY Toll/Interleukin receptor TIR domain 29 178 IPR035897 -
Vivi364g00030 794 MobiDBLite consensus disorder prediction 1 20 - -
Vivi364g00030 794 Pfam TIR domain 31 199 IPR000157 GO:0007165
Vivi364g00030 794 PRINTS Disease resistance protein signature 405 419 - -
Vivi364g00030 794 PRINTS Disease resistance protein signature 313 327 - -
Vivi364g00030 794 PRINTS Disease resistance protein signature 236 251 - -
Vivi364g00030 794 PRINTS Disease resistance protein signature 641 657 - -
Vivi364g00030 794 SUPERFAMILY L domain-like 561 739 - -
Vivi364g00030 794 Gene3D - 28 208 IPR035897 -
Vivi364g00030 794 Gene3D - 370 454 IPR042197 -
Vivi364g00030 794 Pfam NB-ARC domain 217 449 IPR002182 GO:0043531
Vivi364g00030 794 FunFam Disease resistance protein (TIR-NBS-LRR class) 28 204 - -
Vivi364g00030 794 Gene3D Ribonuclease Inhibitor 562 743 IPR032675 -
Vivi364g00030 794 SUPERFAMILY "Winged helix" DNA-binding domain 441 547 IPR036390 -
Vivi364g00030 794 SMART till_3 30 176 IPR000157 GO:0007165
Vivi364g00030 794 ProSiteProfiles TIR domain profile. 29 202 IPR000157 GO:0007165
Vivi364g00030 794 Gene3D - 209 365 IPR027417 -
Vivi364g00030 794 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 31 734 IPR044974 GO:0006952
Vivi364g00030 794 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 465 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi364g00030 20 733 WRKY Transcription Factor Family AT4G12020 29.837 5.12e-79 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi364g00030 - - psat:127121188 1250.34