Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi35g00001 ATGGATGGAAAGGGAAATAATAGTAATAATGCGGGGGTTCGATATAGAGGTATTCGTATAAGACCATGGGGTAAGTTTGCAGCAGAAATTCGTGATCCAACAAGAAAGGGTACTCGTATTTGGCTTGGAACATTTGATACTGCTGAACAAGCTGCACGTGCTTATGATGCTGCTGCTTTTCATTTTCGTGGTCACAAAGCCATTCTCAACTTCCCAAATGAATATGCACATTCTACTACTAGTTATTATATTCCAAACACTACTTCTCCCTCAGATAATACATTGCCTAACTCTTCTTCTTCCTATCAGCAACATGTACAACAACAACAAGATGATGATGATATTTTAGATCAACTGGCTTGCTTGGACTACAAGTTGTTGGAAGAGTTCCTTCATGGGCAAGATGATGCTGCAGCCGGTAGCTCTAGACATGCGAGTGAATAG 444 0.4054 MDGKGNNSNNAGVRYRGIRIRPWGKFAAEIRDPTRKGTRIWLGTFDTAEQAARAYDAAAFHFRGHKAILNFPNEYAHSTTSYYIPNTTSPSDNTLPNSSSSYQQHVQQQQDDDDILDQLACLDYKLLEEFLHGQDDAAAGSSRHASE 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi35g00001 147 MobiDBLite consensus disorder prediction 85 111 - -
Vivi35g00001 147 CDD AP2 14 73 IPR001471 GO:0003700|GO:0006355
Vivi35g00001 147 Gene3D AP2/ERF domain 13 73 IPR036955 GO:0003700|GO:0006355
Vivi35g00001 147 SMART rav1_2 14 78 IPR001471 GO:0003700|GO:0006355
Vivi35g00001 147 Pfam AP2 domain 14 65 IPR001471 GO:0003700|GO:0006355
Vivi35g00001 147 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Vivi35g00001 147 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Vivi35g00001 147 MobiDBLite consensus disorder prediction 85 109 - -
Vivi35g00001 147 PANTHER DNA-BINDING DOMAIN 10 113 IPR044808 GO:0003700|GO:0009873
Vivi35g00001 147 FunFam Ethylene-responsive transcription factor 2 14 73 - -
Vivi35g00001 147 ProSiteProfiles AP2/ERF domain profile. 14 72 IPR001471 GO:0003700|GO:0006355
Vivi35g00001 147 SUPERFAMILY DNA-binding domain 14 73 IPR016177 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi35g00001 14 135 AP2-EREBP Transcription Factor Family AT3G23230 50.820 1.41e-34 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi35g00001 AP2 8.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi35g00001 - - gmx:100778998 148.288