Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi358g00015 ATGGAAACTAGTACCAACAAATCTCAAGCTCCTTCTTCTTCTACTACTGATTCAGACATTGATAATAACGATTCAGGTTGTTGTTCCAGCAGTAGTAGTAGCAGATCTGATGCTGCAGCAGCAGCTGAGTTGAAACTGTATAGGGCTTTCATATTCTCTGTGCCTATTTTCTTCACTTTGATTCTTGTTTTTCTTTTCTATGTTTTCTATTTGAAACCTCGGAGGGTTGATTGGTCTTCTATCAGAATGAGGTCTGTTTCTGTTTTACAACATCATAATCACAACAACGATATCTCCACTTCTGATTTGGGGTTGAAGAAAGAGTTGAGAGAGATGTTGCCTATTATTGTGTACAATGAAAGCTTCTCTGTCAAAGATACACTATGCTCGGTATGTCTTCTGGACTACCAACCAGATGACAGACTTCAACAGATTCCGGTATGCGGCCATACATTTCATATGAATTGCATTGATCTTTGGCTTGCTAGCCACAGCACCTGCCCTCTCTGCCGTCTGTCGCTACTACCTACCGCTAAATCATCGACCGAAACATCTAATATGCAGGCCACAAGCAACGAAGAACTGGAGATGCAACGGAGAAATGACGAAACGCCAGCCATGGAATTCTCTGACTCGGTATCTTCCAGTCACCGAGAAACCACTTTCATTGAAAATGTCTCTGGAGAAGTTGGGATCAACACTCACCCGCGCATCGATGTTCAAGAGCAAAACGTATGA 738 0.4241 METSTNKSQAPSSSTTDSDIDNNDSGCCSSSSSSRSDAAAAAELKLYRAFIFSVPIFFTLILVFLFYVFYLKPRRVDWSSIRMRSVSVLQHHNHNNDISTSDLGLKKELREMLPIIVYNESFSVKDTLCSVCLLDYQPDDRLQQIPVCGHTFHMNCIDLWLASHSTCPLCRLSLLPTAKSSTETSNMQATSNEELEMQRRNDETPAMEFSDSVSSSHRETTFIENVSGEVGINTHPRIDVQEQNV 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi358g00015 245 FunFam RING-H2 finger protein ATL7 95 176 - -
Vivi358g00015 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 178 IPR013083 -
Vivi358g00015 245 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Vivi358g00015 245 MobiDBLite consensus disorder prediction 1 33 - -
Vivi358g00015 245 CDD RING-H2_EL5-like 129 171 - -
Vivi358g00015 245 MobiDBLite consensus disorder prediction 199 218 - -
Vivi358g00015 245 Pfam Ring finger domain 129 171 IPR001841 -
Vivi358g00015 245 SMART ring_2 129 170 IPR001841 -
Vivi358g00015 245 SUPERFAMILY RING/U-box 113 177 - -
Vivi358g00015 245 PANTHER RING-H2 FINGER PROTEIN ATL16 46 213 IPR044600 GO:0016567|GO:0016740
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi358g00015 36 220 C3H Transcription Factor Family AT4G10150 49.231 1.01e-61 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi358g00015 K19039 - gmx:100794211 243.432