Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi357g00034 ATGGCTAGGTTTTGTAAAGGCAATCAAGATGAAGAACTGTTGGATGATGATCAAGACCTCTATACTGTCAACACTTCTTCCGCTCTCAATATCAACAACAACAGCAATGTGAAGGTGGATGAAACTGGTAGAGGTAAAAGAGCGAACCCTCATCGTTCTAAGCATTCTGAGACTGAGCAGCGTAGAAGAAGCAAAATTAACGAAAGATTTCAGGTTCTGAGAGAACTTATACCTCAAAATGATCAAAAAAGAGATAAAGCTTCTTTTTTGTTGGAGGTTATTGAATACATTCAGTTCCTACAGGAAAAGTTACAAATTTATGAACAATCTTATGAAGGATGGAATCAGGAGCCAAGCAAATTAATTCCATGGAGAAATCATCACGGACCTGCCGAAAATACTATAGATCCTTCTCGAGCTATTCAAAATGGGTCTGTTCATGAAACACGTAACAACGTCTCTCTGTCATTGCCTAAAAACGTACAGAACCCAATAGAACCTGACCCCTCCACAACTATTCAGAAGGGTTGCACCCCTGGTTCATCCGGAGAAACAGTTCCCTTGACAATGCAAATGCGATTGGACATGTTTGATCCGGTTGTTAGCAGTGGTATGGTGACTCAACAGATGCTGGAGTTGCCTGTATCTAATGCTGGCATGGCTTCGAATCTCCAGCCTCAAGTATGGCTAAGCAAACCAAACAAGGGCGACTACGTTGTTCCAGATAATACATTGAAGGAAGAAGAGGAGCTGAAAATTGATAGTGGGTCAGAGTCAGATAGCATCTCAAGTGCCTACTCTCAAAGAATATTAGGTACTCTCACCCAAGCGCTGCAATCTTCGGGTGTAGATTTGTTGCAGACCAGTGTTTCGGTGCAAATTGATGTTGGTAGACGAGCAAATACTGGGTCAGCCCCTTGCCAATATGGCTCAAAGGGTCATGAAAATCAGTATATGAGCAATCAAGCAATGACATGTGATTACTTCAGTGAGGATTCTGAACAAAGTCCAAAGAGGTTCAGACGAGAAGCTAGCTAG 1038 0.421 MARFCKGNQDEELLDDDQDLYTVNTSSALNINNNSNVKVDETGRGKRANPHRSKHSETEQRRRSKINERFQVLRELIPQNDQKRDKASFLLEVIEYIQFLQEKLQIYEQSYEGWNQEPSKLIPWRNHHGPAENTIDPSRAIQNGSVHETRNNVSLSLPKNVQNPIEPDPSTTIQKGCTPGSSGETVPLTMQMRLDMFDPVVSSGMVTQQMLELPVSNAGMASNLQPQVWLSKPNKGDYVVPDNTLKEEEELKIDSGSESDSISSAYSQRILGTLTQALQSSGVDLLQTSVSVQIDVGRRANTGSAPCQYGSKGHENQYMSNQAMTCDYFSEDSEQSPKRFRREAS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi357g00034 345 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 8 342 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vivi357g00034 345 Coils Coil 97 117 - -
Vivi357g00034 345 MobiDBLite consensus disorder prediction 25 39 - -
Vivi357g00034 345 Pfam Helix-loop-helix DNA-binding domain 52 101 IPR011598 GO:0046983
Vivi357g00034 345 MobiDBLite consensus disorder prediction 25 65 - -
Vivi357g00034 345 MobiDBLite consensus disorder prediction 40 65 - -
Vivi357g00034 345 CDD bHLH_AtBIM_like 52 125 - -
Vivi357g00034 345 SMART finulus 56 106 IPR011598 GO:0046983
Vivi357g00034 345 Gene3D - 48 121 IPR036638 GO:0046983
Vivi357g00034 345 MobiDBLite consensus disorder prediction 158 181 - -
Vivi357g00034 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 100 IPR011598 GO:0046983
Vivi357g00034 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 129 IPR036638 GO:0046983
Vivi357g00034 345 FunFam BHLH domain class transcription factor 48 120 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi357g00034 3 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 41.667 3.87e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi357g00034 HLH 1.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi357g00034 - - mtr:11428511 538.495