Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi357g00026 ATGGTGGTTGTTTTAGCTTCATCCTCTGATGCTAGTGGTGGGATTGGATGCTGGGACCTTCACACAGGTACTGAGCAGATCCGCTATAAATCATTATCTTCCCCTGGCCATGGACTGGTCTCTGTTGGTGATCGTTTTCTTGCATCATCTCAGCTCCGAGACGCATCAACTTCCTCTGGTTCTGTTTTCTTCTGGTCCTGGTCCAAGCCTCAAGTCGAAGTAAAGAGCTTTCCCTCTGAACCTATTACACCTCTTGCGGCTAATCACAGCGGCACCTATCTTGTTGGTGGAGGTTTGTCAGGTGAAATATACTTGTGGGAGGTTGAAACCGGCAAATTGCTTAGGAAGTGGCATGGTCATAATACGGCTGTTACTTGCCTGGTATTTTCTGAAGACGACTCACTTCTAATATCTGGTTTTAAAAACGGAAGCGTACGAGTTTGGTCTCTCTTAATGATATTTGATGATGTGAGAAGACGGGAAGCAAGCCAGATTTACGAGTATAGTTTTTCAGATCACACTTTGTGTGTAAATGATGTTGTGATTGGTTCTGGAGGGTGCAATGCAATTATAGTTTCGGCATCAGATGATCGGACCTGTAAGGTATGGAGCTTATCTAATGGAATGCTACAAAGAAATATAGTATTCCCTTCAAAGATTAAAGCTATTGCATTGGATCCTGCTGAACATGTCTTTTATGCTGGCAGTGAAGATGGAAGAATATTTATCGTTGCACTTAACACCACAAAAATTGCTACCAATAATCAAGTATCGTATATCATTGATTCATTTTCTAACCACAGCAAGGCAGTTACTTGCTTGGCATATAGCGCCGGCGATAACTGTTTAATATCGGGGTCTGAGGATGGAATAGTTCGAGTTTGGAATGCAAGTACTCATAACATCATCCGTGTCTTTAAACATGCTAAAGGACCAATAACAAACATTATTGTCGTTAGACCCGAAAATGATTCAAGCAATCATATGTCATCTAATTTACAAGCAGCCTCAAAAAAGAAGGGAGCTCAATTTCCTCCTTTGGAAAAATATGCAAATTCAATACACGGACATTCAGTTACCAAGACTATCGTCAGTCTTGGGGATAGCGATAGATGCATGGATGTTTCATACCTTAGTTCTCATGTGATTTCTAATTACAGTAAAGAACTTCAGAATCAAGGTTCAGCTGCCGCTTCTGAAATGGAGATAGAGAAACTTAAACACGAATGCCAAAAGTCTGCGCAGATGGTTAATCAATGGAAGAAAATGTATGAAAACCTGCATCAGTTTTGTGTAAAAGAGCTAGTAGATGAAAATAAGAACTAA 1326 0.405 MVVVLASSSDASGGIGCWDLHTGTEQIRYKSLSSPGHGLVSVGDRFLASSQLRDASTSSGSVFFWSWSKPQVEVKSFPSEPITPLAANHSGTYLVGGGLSGEIYLWEVETGKLLRKWHGHNTAVTCLVFSEDDSLLISGFKNGSVRVWSLLMIFDDVRRREASQIYEYSFSDHTLCVNDVVIGSGGCNAIIVSASDDRTCKVWSLSNGMLQRNIVFPSKIKAIALDPAEHVFYAGSEDGRIFIVALNTTKIATNNQVSYIIDSFSNHSKAVTCLAYSAGDNCLISGSEDGIVRVWNASTHNIIRVFKHAKGPITNIIVVRPENDSSNHMSSNLQAASKKKGAQFPPLEKYANSIHGHSVTKTIVSLGDSDRCMDVSYLSSHVISNYSKELQNQGSAAASEMEIEKLKHECQKSAQMVNQWKKMYENLHQFCVKELVDENKN 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi357g00026 441 PRINTS G protein beta WD-40 repeat signature 191 205 IPR020472 -
Vivi357g00026 441 PRINTS G protein beta WD-40 repeat signature 283 297 IPR020472 -
Vivi357g00026 441 PRINTS G protein beta WD-40 repeat signature 136 150 IPR020472 -
Vivi357g00026 441 SUPERFAMILY WD40 repeat-like 57 315 IPR036322 GO:0005515
Vivi357g00026 441 ProSiteProfiles Trp-Asp (WD) repeats profile. 82 116 IPR001680 GO:0005515
Vivi357g00026 441 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Vivi357g00026 441 ProSitePatterns Trp-Asp (WD) repeats signature. 283 297 IPR019775 -
Vivi357g00026 441 PANTHER WD-REPEAT PROTEIN 18 2 435 IPR045227 -
Vivi357g00026 441 Pfam WD domain, G-beta repeat 111 149 IPR001680 GO:0005515
Vivi357g00026 441 Pfam WD domain, G-beta repeat 170 204 IPR001680 GO:0005515
Vivi357g00026 441 Pfam WD domain, G-beta repeat 262 296 IPR001680 GO:0005515
Vivi357g00026 441 SMART WD40_4 70 107 IPR001680 GO:0005515
Vivi357g00026 441 SMART WD40_4 257 296 IPR001680 GO:0005515
Vivi357g00026 441 SMART WD40_4 163 204 IPR001680 GO:0005515
Vivi357g00026 441 SMART WD40_4 110 149 IPR001680 GO:0005515
Vivi357g00026 441 SMART WD40_4 207 245 IPR001680 GO:0005515
Vivi357g00026 441 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 117 150 - -
Vivi357g00026 441 ProSiteProfiles Trp-Asp (WD) repeats profile. 117 150 IPR001680 GO:0005515
Vivi357g00026 441 Gene3D - 156 381 IPR015943 GO:0005515
Vivi357g00026 441 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 299 - -
Vivi357g00026 441 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 213 IPR001680 GO:0005515
Vivi357g00026 441 Gene3D - 3 155 IPR015943 GO:0005515
Vivi357g00026 441 FunFam Protein ROOT INITIATION DEFECTIVE 3 1 243 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi357g00026 80 357 Eukaryotic Initiation Factors Gene Family AT2G46290 21.993 6.32e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi357g00026 K14829 - gmx:100791195 645.966