Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi357g00019 ATGGGTTCCTTTTGTTCTTGTTTGAGTGTTGATGATTTGGAAGATTATATGAATCCACATAGCCATGTTTACCGAAACTGCGTGTGCGCCGGTTGCTTCCTACAAAACCTTTTGGCTGTTTATGCGTTAGTATTTCGTAGAGGGGACATGCAAGCGCTTCCTTCATCTGTACAGGGGGCAGCATCTATGACGACTTCCGCATCACTTGATAATTCTCTATCTGACATGTACCGTTCTCCTCCAAGACCGCTCCCTTATGATGCAGACCCTAGGTTTTTCCGCTCACAGCACGACAGACTAGTTTCAAGACGTGAAAAGGGTTCAAGTCATTTGAACGAGTCCGAACTTCTAAGAAGTGATGTGGATGCAGATACAGAATCTTTTAACTCGAGTGGTAAATGGAATGAATCCACCGGCAAAGATGGATCGAAAGAATACCGGTCCAAGTCCTCAGCTAGACTTTCGTCAGCAAAACTTACAACTGGAGCTGAGCTTGTGTACCTGTCCTCAGAAGAGGAGGATGTTTGTCCTACTTGTCTTGAAGAATACACCGAAGAGAATCCGAAAATAATGACAAAATGTTCTCATCATTATCATCTTGGTTGCATATACGAGTGGATGGAAAGAAGCGACAGCTGTCCTGTTTGTGGGAAGGTGATGTTATTCGATGAAACGATTTGA 681 0.4376 MGSFCSCLSVDDLEDYMNPHSHVYRNCVCAGCFLQNLLAVYALVFRRGDMQALPSSVQGAASMTTSASLDNSLSDMYRSPPRPLPYDADPRFFRSQHDRLVSRREKGSSHLNESELLRSDVDADTESFNSSGKWNESTGKDGSKEYRSKSSARLSSAKLTTGAELVYLSSEEEDVCPTCLEEYTEENPKIMTKCSHHYHLGCIYEWMERSDSCPVCGKVMLFDETI 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi357g00019 226 SMART ring_2 176 216 IPR001841 -
Vivi357g00019 226 Pfam RING-H2 zinc finger domain 171 216 IPR024766 GO:0008270
Vivi357g00019 226 MobiDBLite consensus disorder prediction 122 153 - -
Vivi357g00019 226 CDD RING-H2_AIRP1-like 172 220 - -
Vivi357g00019 226 MobiDBLite consensus disorder prediction 123 137 - -
Vivi357g00019 226 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 60 224 - -
Vivi357g00019 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 222 IPR013083 -
Vivi357g00019 226 SUPERFAMILY RING/U-box 170 222 - -
Vivi357g00019 226 ProSiteProfiles Zinc finger RING-type profile. 176 216 IPR001841 -
Vivi357g00019 226 FunFam E3 ubiquitin-protein ligase At3g02290-like 153 223 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi357g00019 1 225 C3H Transcription Factor Family AT5G15790 56.710 7.21e-90 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi357g00019 - - gmx:100788192 379.022