Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi357g00015 ATGGGAAGAGGTAGGGTTCAATTGAAACGGATCGAGAACAAAACAAGTCAGCAAGTAACATTCTTCAAAAGAAGAACTGGACTTCTCAAGAAAGCTAATGAAATTTCTGTTCTTTGTGATGCTCAAGTTGCTTTGATTATGTTTTCTACCAAAGGAAAACTTTTTGAGTATTCCTCAGCACCAAGCATGGAAGATATTTTGGAAAAATATGAGAGACAAAATCATACAGAACTTACTGGAGCTGCTACCAATGAAACACAGGGAAATTGGACTTTTGAATACATGAAGCTAACTGCTAAAGTTCAAGTCTTAGAGAGGAACTTAAGGAACTTTGTGGGACATGATTTGGATCCTTTGAGTGTGAAAGAGCTTCAGAGTTTGGAGCAACAGCTCGACACATCGCTTAAGCGCATCCGAACAAGAAAGAATCAAGTTATGAATCAATCCATCTCCGAGCTGCACAAAAGAGCGAGGGCATTGCAGGAACAAAACAGCAAGCTAGCAAAGACAAAGGAGAAAGAGAAGATGGTGAATGAACATCCACAGAGATGCATTGAAACCATAGGCATAGGGCAAGGTTCATCCACTCTCAACTTAGGGTTTCAACCACAGGTTCTACCACCACAAAGACTCGTTCCTTCTCTATCTCTCAGTGGGGCTATACAAGCAAGAGGGTCATTGGAATTCGAAGAAACAGGTGAAGCTCAAACTGTTCCTATCAACAACAATAATAATCTTATTCCAGCATGGATGCTACAACATCTTACCAACTAG 774 0.4044 MGRGRVQLKRIENKTSQQVTFFKRRTGLLKKANEISVLCDAQVALIMFSTKGKLFEYSSAPSMEDILEKYERQNHTELTGAATNETQGNWTFEYMKLTAKVQVLERNLRNFVGHDLDPLSVKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKRARALQEQNSKLAKTKEKEKMVNEHPQRCIETIGIGQGSSTLNLGFQPQVLPPQRLVPSLSLSGAIQARGSLEFEETGEAQTVPINNNNNLIPAWMLQHLTN 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi357g00015 257 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi357g00015 257 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Vivi357g00015 257 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Vivi357g00015 257 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Vivi357g00015 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi357g00015 257 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi357g00015 257 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi357g00015 257 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi357g00015 257 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi357g00015 257 Coils Coil 124 170 - -
Vivi357g00015 257 ProSiteProfiles K-box domain profile. 87 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi357g00015 257 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Vivi357g00015 257 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 172 - -
Vivi357g00015 257 Pfam K-box region 85 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi357g00015 1 184 MADS-box Gene Family AT1G26310 56.383 6.99e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi357g00015 K-box 3.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi357g00015 K09264 - gmx:100788956 321.627