Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi356g00016 ATGGAGAATGAGCAATGGTGCACCATATGCTTTAAAATGGTGAGCCCAATGAGTGAATATGAAAACAAATGTCCCTTTTGTGATACACAATTTGGTGATGCAATGGAAAATCTAAGTAATCATCATAATAATGATGCTATTGATTTAAGGTCGGCTTGGATTTTCTCACTTTATGCACCAATTTTTCTTGGTTTGATGAATGCTTTTACTCCTTCTCTAGCAACAATTTCTTCACAAGCAAGCAGTACATCAAGAAATGATGAGGATTTGGAACAAGAGAGAGGAAATTACAATGAACTTGTAATTGGAAGAAGGAGAAGAACTTCAACTTACATGATGCATCTCTTTAGAGGACTTCATGTTAGAATGGTTTCAGAAAATGAAAACATAGAACAAAATAGAAATATTATTGACAACAATAATAATATTGTTAATAATAATAACAACAATAGTAATAATAATAGTATACTTGTTATTGATCCATTAAATGAAGGTGCATTAATTGTGAGAGGACCCAATTTGAATCATACAAATTTAAATAGGTCAAATGAAAATAATATTAATACTATTGGATCTTTGAATGATTTTGTGGATGGAAGTGGATTTGATTTATTGCTACAACAATTGGCACAAATTACTCCGAGTGGTTATGCAAGTGTGAATCCACCAACAAAGAAGGTAGCAATTGAAGCAATGGAAAATATGATAAATGATGAGACATTGCCATGCACAATATGTTTAGAAGATGTTGAGATTGGAAGTGTTGCTAAAGAAATGCCATGCAAGCATAAGTTTCACAGTGAATGTATTGTTTCATGGCTTAAACTACATAGTTCTTGTCCAGTTTGTAGGTTTCAAATGCCTTGTGAGGATTCAAATGTTTTGGCTAATTTGGAAAATGGAAATAGAGAGATTCAAAATAGTGAGGTTGTGAGGAGAGGTAGAAATGGAAGGAGGAATTGGTTTCCAGTGCTTCAATCTTTTAATAATTTTCTTCCTTTTCCTTGA 1008 0.3254 MENEQWCTICFKMVSPMSEYENKCPFCDTQFGDAMENLSNHHNNDAIDLRSAWIFSLYAPIFLGLMNAFTPSLATISSQASSTSRNDEDLEQERGNYNELVIGRRRRTSTYMMHLFRGLHVRMVSENENIEQNRNIIDNNNNIVNNNNNNSNNNSILVIDPLNEGALIVRGPNLNHTNLNRSNENNINTIGSLNDFVDGSGFDLLLQQLAQITPSGYASVNPPTKKVAIEAMENMINDETLPCTICLEDVEIGSVAKEMPCKHKFHSECIVSWLKLHSSCPVCRFQMPCEDSNVLANLENGNREIQNSEVVRRGRNGRRNWFPVLQSFNNFLPFP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi356g00016 335 Pfam Ring finger domain 243 284 IPR001841 -
Vivi356g00016 335 SUPERFAMILY RING/U-box 227 289 - -
Vivi356g00016 335 ProSiteProfiles Zinc finger RING-type profile. 243 284 IPR001841 -
Vivi356g00016 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 129 288 - -
Vivi356g00016 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 290 IPR013083 -
Vivi356g00016 335 SMART ring_2 243 283 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi356g00016 138 302 C3H Transcription Factor Family AT1G26800 28.916 1.16e-20 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi356g00016 - K11982 cam:101512035 487.648