Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi354g00054 ATGGGCGACGGCAACCGCTCCAGCAGCAACAAACCAGAGTGGCTTCAGCAGTACGATCTGATCGGGAAGATCGGAGAAGGAACCTACGGTCTCGTCTTCCTCGCTCGGATCAAGTCCGCCACCAACCGCGGAAAATCCATCGCCATCAAGAAATTCAAACAATCTAAAGACGGCGACGGTGTCTCTCCCACCGCCATTCGTGAAATCATGTTGCTGAGGGAGATCACTCATGAAAATGTTGTGAAGCTTGTGAATGTTCACATCAATCATACAGACATGTCTCTGTATCTAGCCTTTGATTATGCCGAGCATGACCTTTATGAAATAATAAGACATCATAGAGATAAGGTCAACCAAGCGATTAACCAGTACACTGTTAAATCGATACTATGGCAGTTGCTCAATGGACTGAACTATCTGCACAGTAATTGGATAATACATCGAGATTTGAAGCCATCGAATATATTGGTTATGGGTGATGGGGAGGAACATGGAGTTGTTAAAGTTGCTGATTTTGGGCTTGCAAGGATATATCAAGCCCCTCTGAAGCCATTATCTGAAAATGGGGTTGTTGTAACCATTTGGTATCGTGCTCCCGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCCGTGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCACTGTTTCAAGGTGCAGAAGTCAAAGCTACACCAAATCCTTTTCAGCTTGATCAACTTGACAAGATATTCAAGGTTTTAGGCCATCCCACATCAGAAAAATGGCCTTCCTTACAACATCATCCCCATTGGCAACAGGATACACAACATATACAAGGACACAAATATGACAATGCTAATCTCTATAGTGTTGTGCACCTATCTCCAAAAAGTCCTGCATATGACCTTTTGTCAAAGATGCTTGAATACGATCCTAAAAGGCGTATAACGGCAGCACAAGCTTTGGAGCATGAGTATTTCAAAATGGAACCACAGCCTGGGCGGAATGCACTTGTACCATGCCAACCTGGAGAGCCATTTGTAAATTATCCCACACGTCCAGTGGATACAACAACAGATTTTGAAGGGACAACCAACATGCAGCAATCACAGCCGGTTTCGTCTGGAGCTGCTATTGCTGGAAACATGCCTGGTGGTCATGTATCAAATAGACCTGTCCCTCGACCAATGAATGTTGGCATGCAAAGAATGCATCAGCTGCAAGCTTATAACCTCCCATCCCAGCCAGGGATGGGTAGTGGAATTAATCCTGCTGGCATCCCAATGCAACGAGGTGTTCCGCAACAGGCCCATCAGCAGCAACAGTTGAGGAGAAAAGACCAAATGGGAATGCCAGGATACCCTCCGCAGCAGAAACCAAGACGTATGTAA 1395 0.4538 MGDGNRSSSNKPEWLQQYDLIGKIGEGTYGLVFLARIKSATNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHTDMSLYLAFDYAEHDLYEIIRHHRDKVNQAINQYTVKSILWQLLNGLNYLHSNWIIHRDLKPSNILVMGDGEEHGVVKVADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTSEKWPSLQHHPHWQQDTQHIQGHKYDNANLYSVVHLSPKSPAYDLLSKMLEYDPKRRITAAQALEHEYFKMEPQPGRNALVPCQPGEPFVNYPTRPVDTTTDFEGTTNMQQSQPVSSGAAIAGNMPGGHVSNRPVPRPMNVGMQRMHQLQAYNLPSQPGMGSGINPAGIPMQRGVPQQAHQQQQLRRKDQMGMPGYPPQQKPRRM 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi354g00054 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Vivi354g00054 464 PANTHER CELL DIVISION PROTEIN KINASE 16 334 - -
Vivi354g00054 464 MobiDBLite consensus disorder prediction 418 464 - -
Vivi354g00054 464 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Vivi354g00054 464 Gene3D Transferase(Phosphotransferase) domain 1 101 343 - -
Vivi354g00054 464 FunFam Putative cyclin-dependent kinase E-1 102 341 - -
Vivi354g00054 464 Pfam Protein kinase domain 18 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi354g00054 464 SMART serkin_6 18 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi354g00054 464 SUPERFAMILY Protein kinase-like (PK-like) 13 330 IPR011009 -
Vivi354g00054 464 ProSiteProfiles Protein kinase domain profile. 18 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi354g00054 464 Gene3D Phosphorylase Kinase; domain 1 5 100 - -
Vivi354g00054 464 FunFam Cyclin-dependent kinase e-1 6 101 - -
Vivi354g00054 464 CDD STKc_CDK8_like 17 328 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi354g00054 1 464 Core Cell Cycle Gene Families AT5G63610 74.113 0.0 695
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Vivi354g00054 Pkinase 6.9e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi354g00054 K02208 - gmx:100813433 835.869