Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi353g00016 ATGGTTTCGCCGGAAAACACCAATTGGCTTTTCGATTATGCTTTGATTGACGATATTCCCGTCTCTGATGGCTCCTTTGCCTTCACGTGGCCACCACAACATCCTATCAATGTCTGTGTTGATATGGATGGTTCTCTGGGAGATTCTGATGGTATCAAAGATCCTGGTTCAAAGAAGAGAGGTAGATCGGATTCGTCTGCTCCTTCCAGCTCTAAGGCATGTCGAGAGAAGCAGCGGAGGGATAGGCTGAATGATAAGTTTGTTGAATTAGGCTCTATCTTGGAGCCTGGAAGGCCACCCAAAACAGACAAGGCAGCAATTCTGACTGATGCTGTTCGAATGGTATCACAGTTGCGGGGTGAAGCCCAGAAATTGAAAGACTCTAATTCCGGTCTTCAAGAGAAGATTAAAGAGTTAAAGGTTGAGAAGAATGAACTCCGCGATGAGAAACAGAGGCTTAAGGCTGAGAAGGAGAAGCTGGAGCAGCAGGTGAAATCAATGAATGCTCAACCCAGTTTCTTGACACACCCTCCTGCAATCCCTGCTGCATTTGCTCCACAAGGCCAAGCCCATAGCAACAAGCTAATGCCTTTCATGAGTTATCCAGGAGTTGCCATGTGGCAATTCATGCCACCGGCCTCCGTGGATACCTCACAGGATCATGTGCTCCGTCCACCAGTTGCCTAA 687 0.4774 MVSPENTNWLFDYALIDDIPVSDGSFAFTWPPQHPINVCVDMDGSLGDSDGIKDPGSKKRGRSDSSAPSSSKACREKQRRDRLNDKFVELGSILEPGRPPKTDKAAILTDAVRMVSQLRGEAQKLKDSNSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQVKSMNAQPSFLTHPPAIPAAFAPQGQAHSNKLMPFMSYPGVAMWQFMPPASVDTSQDHVLRPPVA 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi353g00016 228 PANTHER BHLH TRANSCRIPTION FACTOR 4 228 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Vivi353g00016 228 Pfam Helix-loop-helix DNA-binding domain 71 118 IPR011598 GO:0046983
Vivi353g00016 228 SMART finulus 73 124 IPR011598 GO:0046983
Vivi353g00016 228 MobiDBLite consensus disorder prediction 47 81 - -
Vivi353g00016 228 FunFam Transcription factor bHLH104 70 151 - -
Vivi353g00016 228 Coils Coil 115 170 - -
Vivi353g00016 228 CDD bHLH_AtILR3_like 72 147 - -
Vivi353g00016 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 118 IPR011598 GO:0046983
Vivi353g00016 228 Gene3D arf6 gtpase in complex with a specific effector, jip4 117 171 - -
Vivi353g00016 228 Gene3D - 58 116 IPR036638 GO:0046983
Vivi353g00016 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 143 IPR036638 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi353g00016 1 228 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 72.385 4.59e-116 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi353g00016 HLH 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi353g00016 - - ccaj:109815088 368.622