Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi351g00013 ATGGAGGGTGACGGCGATACCAGTGTTGGAAATCGAAAACGGAAAAGAGGCTCGTTGAAAACAAAGCTCCTTGTTAATGAAAAAGTTGAGCTGAGGAGTTTGGAAGATGGTTTTCTGGGATCATGGCATCCGGGGAAAATTATCCGCCGCGCAAGGACGAAGCGCTATGTTAAATATGAAAATATTCTTAATGACGACGAATCAGATTACATTGTTGATGTTGTGAGTGTTTCTAATGTTTTGGATGGTGTTGTTGATTCTTCTTCTGCTTCAGATTGTGGTTACAGTTACAGACGTGGACTTATTAGACCAGTCCCGCCTTCGATTGAGTTAGAGAGAATGGATCTTCCATTCGGATTTTGTGTTGATGTGAATTATCAGGATGCTTGGTGGGAAGGTGTGATATTCGATCGCTGCAATGGAATGGAGGAGAGGAGCATATTCTTCCCTGATTTAGGTGATGAAATGAAGGTTGGAGTTACGCAATTGAGAATTACTCAGGATTGGGATGAATCAACTGAGAACTGGTTACCAAGAGGGAAATGGGTGTTTCTTGAGTTGTTTGAGGAGTGTGAGAGGGTATCCTATGTCGCAATCTCGGTGAAACAGATTTGGTATGATGTCAGGATGAGAAAGGATTATGCTGAGACCATTCGAGAATGGACTTGTAATGTGAAGGAATTGTGGAAAGACCTTGTTGTGGAGGTGATTGGTGAGTACTATACCATCACGCTTAACGAAGTTCGCCCCGCCTTAAACCTTCCGAAGAATTTACTCGAAGGAGGGTCATCTGAACCAACTGATAATGTTCACATTGAAGCTAATCACGGTAATGCGTCTGGTTCTGATGTTGGAACATCTGATAGGCCTAAGGAAAATGGTGATTCTTCAAACTTGATGGATACAGATCAAAACTGCGGTGGGACTAGCATCTTTCCTTTGGTGGATGGGGACTGTGAGAAGCAAATTATTTTACATGAAGAGCTTGAATCAGATAAGGATCGAATACGGAGACATTCTAAGTCCATAATTTGGCAACCTCTGAGACTGTCTGAAGTTGAATTCTGTCCTGAAGTTGTTCATGAGTATGCACTTGGATGTAGGAGCAAGACAGTTCGGGAAACCTTGAAGACGAAAGTAAGGAAACATCTTGCATTTCTTGGTTGGACAATTGAGTGGACCGAAAACAGTTGTCGTCAAAATAGACGATACCGGTACATTTCACCAGATAAGCGTGACCGGAAATGTTACACTTCGATTTTTCAAGTTACTCAAGTTTTGCAAGAGTATCCCAACATGAACTCTAAGCTGCCCCAGATTGACGGAAATCTTTCACATCTGGCCTCTGATCCACCCCGAATGAACAATGATCTAGATGTTTGTCCTCCAACCACTGAGCCTTCTTCAGTTAAAGTTCAACTTGAACCAGAATTCTGTCCTCTAGCCGTCGTGAAATATTACTTGTACACAATAGAGAGAAACTCAGCTGAGAAGAGAGAGTGGAAATTAAAGGCGAAAAAACATCTGTTAGCAGAAGGATGGATCTTTGATTACCCAACTGAAAGAAGGAGGGCATTTGTGTACAATTCTCCACAAAATCATTGTTTACGCACACTTCGAGGTGCATGCAGGCTGTACCTAAAAGAAAAAATTCCTGAATGGACTGATTCAGATCATGTCGATGGTGATGCTCTATTGCTGAGTGTGTTCCAATTGCTTCAAGAAGAGCCTGAATTACAAACTATAGATGATTCACCACCAACTGCAAGGAGAAAACGTAAAGGCACCAGGACTTCAAAGAGTAGTGTACAAAAGAATCTAGAGAAGGAAGTACCTAACCGTAAAGGCGCAAGTACTTCAAAGGCTAGTGCAGAAGAGGATCAAGAGGAGGAAGAACTTACCCGGGTGCTAAGAACAAGCAAAAGGGTGCAGACGGTTTTTGGTTTGTCGCATCAAAAACCTCAAAATATTGTGTCTTGGTTAATAGGTTGCAAAATTGTGTTGCCAAGATACAAGGTCTATTACTGGGAAACAGAAGGCAGAGACTCACCTACGTTTGAGGGAAGGATTACTCTAGAAGGAATTAAGTGCACATGTTGTCAGAATGTATTTGGACTCAGCGGCTTTGCAAACCATGCTGGTGGAAGCAGTAACAGAAGGCCTTCGGCGTGTATCTTTTTGAAGGATGGAAGGTCACTGTTAGATTGCATGAGGGAAGTAATGCATGATCAAAGGTCAAGGGAAACGAAAGAGAAACCATGCAATAATCTGTTTGAAGGCGAAAATGACAACATTTGTTCTGTTTGTAACTACGGGGGTGAACTTATTTTATGCGACCAATGCCCATCGTCGTTTCATAAGAAGTGTCTTAATTTGGAGGGCATCCCTGATGGTGATTGGTTTTGTCCATCATGCCGTTGTGGGATTTGCGGCCAAAACAAAATTGAAGAGACAAAAGATGGAGATTTTCTTACTTGCATTCAGTGTGAACATAAATATCATGTTGAGTGCCTCAGAAATAGAGCAAAAGATAACTCGAGACGATATATGAAAAATTGGTTCTGCGGAGAAGAATGTGAAAGGGTCTACACAGGGCTCCAAAATCTATTGGGAAAGCCGGTTTTAGTGGGCGAGGACAATCTAACTTGGACATTGGTGAAGTATGTCAACTCTGATAGTTGTAGTGTTGGCAGTGCTGAAAATGATCTAGTGGCAGAGAGTTACAGCAAACTCAGCGTTGCACTTTCGGTGATGCATGAATGTTTTGAACCCTTACCTAACCCCTTCTCTAGCGGAGATATCGTGGAAGACGTTATATTTAACCAAAGGTCGGAGCTCAACAGACTAAACTTCCAGGGTTTCTATACCGTACTTCTAGAGAGGAATGAAGAACTAATCAGTGTGGCTACTATAAGGATATTTGGAGACAAGATAGCTGAAGTTCCTCTAGTCGGTACCAGATTTCAGTATAGACGACTTGGAATGTGCCGTGTTTTAATGGATGAGCTTGAAAAGAAGCTAAAGCATCTGGGAGTGGAGAGACTAGTCTTACCAGCTGTTCCTGGTGTACTAGAAACATGGACCAATTCTTTTGGTTTCAAGCAGATGAGTAATTTCGAGAGATCGCAGTTTATAGACTATTCTTTCCTAGACTTTCAGGGAACTACCATGTGCCAGAAACTGTTAACAAGACTTCCATCTCCTGAATCGGGCGTAACAAGAGACACTACTCCGAAACAACAAGACCTTGGATTCTCTGTGAAATGCAGAATTAATTTTGAAAAAGCTAGTCCAGGATCAGAAGTGGATCAAGCAGAAAGGACTGGAAAAATGGATTTACAAGTTTGGAGACCTATGCCTAGTTCCTAA 3369 0.42 MEGDGDTSVGNRKRKRGSLKTKLLVNEKVELRSLEDGFLGSWHPGKIIRRARTKRYVKYENILNDDESDYIVDVVSVSNVLDGVVDSSSASDCGYSYRRGLIRPVPPSIELERMDLPFGFCVDVNYQDAWWEGVIFDRCNGMEERSIFFPDLGDEMKVGVTQLRITQDWDESTENWLPRGKWVFLELFEECERVSYVAISVKQIWYDVRMRKDYAETIREWTCNVKELWKDLVVEVIGEYYTITLNEVRPALNLPKNLLEGGSSEPTDNVHIEANHGNASGSDVGTSDRPKENGDSSNLMDTDQNCGGTSIFPLVDGDCEKQIILHEELESDKDRIRRHSKSIIWQPLRLSEVEFCPEVVHEYALGCRSKTVRETLKTKVRKHLAFLGWTIEWTENSCRQNRRYRYISPDKRDRKCYTSIFQVTQVLQEYPNMNSKLPQIDGNLSHLASDPPRMNNDLDVCPPTTEPSSVKVQLEPEFCPLAVVKYYLYTIERNSAEKREWKLKAKKHLLAEGWIFDYPTERRRAFVYNSPQNHCLRTLRGACRLYLKEKIPEWTDSDHVDGDALLLSVFQLLQEEPELQTIDDSPPTARRKRKGTRTSKSSVQKNLEKEVPNRKGASTSKASAEEDQEEEELTRVLRTSKRVQTVFGLSHQKPQNIVSWLIGCKIVLPRYKVYYWETEGRDSPTFEGRITLEGIKCTCCQNVFGLSGFANHAGGSSNRRPSACIFLKDGRSLLDCMREVMHDQRSRETKEKPCNNLFEGENDNICSVCNYGGELILCDQCPSSFHKKCLNLEGIPDGDWFCPSCRCGICGQNKIEETKDGDFLTCIQCEHKYHVECLRNRAKDNSRRYMKNWFCGEECERVYTGLQNLLGKPVLVGEDNLTWTLVKYVNSDSCSVGSAENDLVAESYSKLSVALSVMHECFEPLPNPFSSGDIVEDVIFNQRSELNRLNFQGFYTVLLERNEELISVATIRIFGDKIAEVPLVGTRFQYRRLGMCRVLMDELEKKLKHLGVERLVLPAVPGVLETWTNSFGFKQMSNFERSQFIDYSFLDFQGTTMCQKLLTRLPSPESGVTRDTTPKQQDLGFSVKCRINFEKASPGSEVDQAERTGKMDLQVWRPMPSS 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi351g00013 1122 MobiDBLite consensus disorder prediction 1097 1122 - -
Vivi351g00013 1122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 757 807 IPR013083 -
Vivi351g00013 1122 ProSiteProfiles Zinc finger PHD-type profile. 763 808 IPR019787 -
Vivi351g00013 1122 SUPERFAMILY FYVE/PHD zinc finger 745 806 IPR011011 -
Vivi351g00013 1122 MobiDBLite consensus disorder prediction 603 624 - -
Vivi351g00013 1122 CDD RING-H2 807 848 - -
Vivi351g00013 1122 MobiDBLite consensus disorder prediction 581 633 - -
Vivi351g00013 1122 SMART ring_2 807 862 IPR001841 -
Vivi351g00013 1122 SMART ring_2 766 805 IPR001841 -
Vivi351g00013 1122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 808 862 IPR013083 -
Vivi351g00013 1122 Pfam Agenet domain 27 107 IPR008395 -
Vivi351g00013 1122 Pfam Tify domain binding domain 688 739 IPR032308 -
Vivi351g00013 1122 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 946 1050 IPR016181 -
Vivi351g00013 1122 CDD NAT_SF 957 1017 - -
Vivi351g00013 1122 Gene3D - 936 1047 - -
Vivi351g00013 1122 SMART PHD_3 807 859 IPR001965 -
Vivi351g00013 1122 SMART PHD_3 765 806 IPR001965 -
Vivi351g00013 1122 Pfam PHD-finger 765 807 IPR019787 -
Vivi351g00013 1122 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 901 1054 IPR000182 GO:0016747
Vivi351g00013 1122 PANTHER PHD FINGER PROTEIN 12 482 1093 IPR042163 GO:0003714|GO:0045892
Vivi351g00013 1122 MobiDBLite consensus disorder prediction 260 287 - -
Vivi351g00013 1122 MobiDBLite consensus disorder prediction 259 305 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi351g00013 23 1005 PHD Transcription Factor Family AT5G58610 36.989 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi351g00013 Agenet 6.7e-14 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi351g00013 - - gmx:102661511 1306.97