Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi34g00070 ATGACACTCTCTCACCAAAATGAAGACTCACAATTTCTTCTCAACCAAATTGGAAATGAAGGTCTCACCAAGCAGATTCTCACAAAAGGTGTCTCTTGGCAAACTCCATTCTCAGGAGATGAGGTTCAAGTTCATTTCAGAGGACAAATTGAAAATGGACCCTCTCTTGAATCCAGTTATGATAAAGGGTCTTCTTTTCATTTCAAATTAGGCCAAGGTGAAGTAATCAAAGGTTGGGATGAAGGAGTTGCTACTATGAAAAAAGGGGAGAGAGCAATCTTCAAAATACCACCTGCCTTAGCATATGGGGAAGTCGGTTCTCCACCGTTGATTCCTCCTAATGCAACTCTCGTTTTTGAGATTGAAATGTTGTGTTGGAGTAGTATTAGAGACTTGACGGGCGATGGAGGAATCATGAAAAAGACGATAAGGGAAGGAGAAGGATGGGCTACTCCAAAAGAGCTGGATGAAGTCCTAGTAAAATATGAAGCAAAGCTTGAGAATGGGATGCTTATTAAGTCTGATAAAGGCGTGGATTTTAATGTAAGTGACGGATATCTATGTCCAGCCATGAGTTTAGCAGTAAAGACAATGAGAAAAGGCGAGGTGGCAGAGCTTTCTACAAAATTCTTCTATGGCCTTAGTCAAAATTCAAATAGAATCATTGAGCTTAATGGTTTACCAGATTCAAATTTAATTAGCATCAAACTCGAGTTGTTATCATGGAAAATTGTGACTGATATCACAGGAGATAAGAAAATACTGAAAAAAATTAATAAACCCGGGGAAGGGTTTGATCGACCAAACGAAGGATCTCGTGTGAAAGTCATGTATTTATGCAAAGGAGAAGATGGTACAATTATTGATAGGAAAGGATCAAAGGATGAACCTTTTGAGTTCACAACTCAAGAAGAACAAGTGCATGAGGGTCTAGAAAGAGCAATTATGACAATGAAAAAAGCAGAACAGGCTTTGGTGACTGTCAATGCTGAAAAAACACTTTTTTATGAAGTTGAATTAATTGATTTCATTAAGGAGAAACCATTTTGGAAAATGGATACTCAAGAGAAACTAGAAGCTTGTGAGCAGAAGAAGCATGATGGAAATCTTCAGTTTAAGGCTCAATATTTTAGGCGCGCGTCTGAGAAATATGAAAAGGCTGTAAAATACATTGAATTTGATCACACATTCAGCGACGACGAGAAGCGTCACGCTAACACCTTGAGACTATCATGTAATCTGAACAATGCTGCTTGTAAACTTAAATTAGAGGAGTATACAGAAGCTGCCAAGCTATGCACAAAGGTCCTAGAACAAGATCCGTTGAATGTTAAGGCTCTTTACAGAAGATGTCAAGCATACCTTAAAACATCAGACTTGGAGAAAGCTGAAGCTGACATTAAAAGAGCACTGAGTATTGATCCAAATAATAGAGACATTAAACTTGAGTACAAAGAGCTCAAACTGAAGCAAAGGGAATACAATAAATATGAAGCTGACATCTTTAGCACAATGGTTTCAAAGATGAATTAG 1533 0.3796 MTLSHQNEDSQFLLNQIGNEGLTKQILTKGVSWQTPFSGDEVQVHFRGQIENGPSLESSYDKGSSFHFKLGQGEVIKGWDEGVATMKKGERAIFKIPPALAYGEVGSPPLIPPNATLVFEIEMLCWSSIRDLTGDGGIMKKTIREGEGWATPKELDEVLVKYEAKLENGMLIKSDKGVDFNVSDGYLCPAMSLAVKTMRKGEVAELSTKFFYGLSQNSNRIIELNGLPDSNLISIKLELLSWKIVTDITGDKKILKKINKPGEGFDRPNEGSRVKVMYLCKGEDGTIIDRKGSKDEPFEFTTQEEQVHEGLERAIMTMKKAEQALVTVNAEKTLFYEVELIDFIKEKPFWKMDTQEKLEACEQKKHDGNLQFKAQYFRRASEKYEKAVKYIEFDHTFSDDEKRHANTLRLSCNLNNAACKLKLEEYTEAAKLCTKVLEQDPLNVKALYRRCQAYLKTSDLEKAEADIKRALSIDPNNRDIKLEYKELKLKQREYNKYEADIFSTMVSKMN 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi34g00070 510 FunFam Peptidyl-prolyl cis-trans isomerase 15 127 - -
Vivi34g00070 510 Gene3D Tetratricopeptide repeat domain 347 504 IPR011990 GO:0005515
Vivi34g00070 510 ProSiteProfiles TPR repeat profile. 444 477 IPR019734 GO:0005515
Vivi34g00070 510 Pfam Tetratricopeptide repeat 444 477 IPR001440 GO:0005515
Vivi34g00070 510 SUPERFAMILY FKBP-like 132 213 - -
Vivi34g00070 510 Gene3D - 11 129 IPR046357 GO:0003755
Vivi34g00070 510 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 39 127 IPR001179 GO:0003755
Vivi34g00070 510 Coils Coil 311 331 - -
Vivi34g00070 510 PANTHER PEPTIDYLPROLYL ISOMERASE 15 129 - -
Vivi34g00070 510 SMART tpr_5 410 443 IPR019734 GO:0005515
Vivi34g00070 510 SMART tpr_5 361 394 IPR019734 GO:0005515
Vivi34g00070 510 SMART tpr_5 444 477 IPR019734 GO:0005515
Vivi34g00070 510 Gene3D - 244 346 IPR046357 GO:0003755
Vivi34g00070 510 SUPERFAMILY FKBP-like 18 126 - -
Vivi34g00070 510 Coils Coil 480 500 - -
Vivi34g00070 510 Gene3D - 130 243 IPR046357 GO:0003755
Vivi34g00070 510 FunFam Peptidylprolyl isomerase 349 504 - -
Vivi34g00070 510 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 155 243 IPR001179 GO:0003755
Vivi34g00070 510 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 267 331 IPR001179 GO:0003755
Vivi34g00070 510 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 36 124 IPR001179 GO:0003755
Vivi34g00070 510 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 151 216 IPR001179 GO:0003755
Vivi34g00070 510 SUPERFAMILY FKBP-like 243 364 - -
Vivi34g00070 510 SUPERFAMILY TPR-like 352 507 IPR011990 GO:0005515
Vivi34g00070 510 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 271 331 IPR001179 GO:0003755
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi34g00070 16 509 Calmodulin-binding Proteins AT5G48570 52.418 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi34g00070 - - vvo:131612367 1005.36