Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi34g00056 ATGCCCGGCGAAATGAAAAGCATGAGCACGAGACAGTGGAGAGCCGAGGAAGTGATTGGTGGCAACACGGAAGCTATTCAAACCCTCAGAGATCTCATTACATTTCCTTGGCGTCTCTTACCCTGTGATGCAAAGAGACTTGGGGTTAAATTTGGAAGAGGTGTTTTGTTACATGGTTCACCAGGCACCGGAAAGACGAGTTTGGTACGGGCAGTTGTTGAAGAATGTGGGGCAATTTTGACGATTATAAGCCCAAACACCATTCATAGCGCACACGTTGGTGAAAGTGAGAGAAATCTACGCGAGGCTTTTTTAGAGGCATCTTCTCATGCAGCATCGGGCAAGTCATCTGTTATCTTTATAGATGAAATAGATGTACTTTGTCCTCGCCGAGATTCCAAGAGGCTTATTGCTTCCCAACTTCGTTTTTTGATGGACTCAAACAAAGCAACCTCTTCTACACCAGGGGTAGTTGTGGTTGCATCCACTAACAGGGTGGATGCAATTGACCCTGCCCTAAGAAGGAATGGGCGTTTTGACGTTGAAATTGAAGTTTCAGTCCCAAATGAAAAGGAGCGCCTTCAAATTCTAGAGCTGTATACAAAGAAGATCCCGCGGGATTCATGCGACTTAGAATTCATTGCTGCGTCATGCAACGGTTATGTTGGAGCTGATTTGGAGGCTTTGTGTCGTAAAGCTATCGAATCTGCCATTAAAAGGTCCAAAAATGCAAATAAAGACATTAATGATTCCAGTTTAACGTTGAAAGATTGGAAGAATGCAAGATCTCTTGTTCAACCGAGTATAACAAGAGGCATTACTGTGGAAGTTCCCAAGGTGACTTGGAAGGATATTGGGGGATTGAAAGACGTGAAGACAAAGCTCGAGAAAGCTATTGAGTGGCCTATTAAGTATCCTGATGCATTTTCAAGACTTGGAATAACCCCTGTTCGTGGAATTCTTCTCCACGGGCCTCCAGGATGTTCCAAAACTACTCTTGCTAAAGCTGCTGCAAATGCTGCTAATGTTCCGTTCTTTTCCTTGAGTGGTGCAGAGTTATTTTCAATGTATGTCGGAGAAGGAGAAAGTTTGCTTCGTGAAATATTTCGCAAAGCTCGGATAGCCGGAAAAAGTATAATATTTTTTGATGAAGCTGACGTAGTTGCTGGCAAACGGGGTGATAGTTCGAGTGGTAGTGCTGCAGTTGGAGAGAGGCTTTTATCAACTCTGCTTACTGAAATGGATGGTTTAGAAGAAGCTAAAGGAGTCCTTGTTTTAGCAGCCACAAACCGCCCTTATGCAATTGATGCTGCACTTATGCGTCCTGGACGATTTGATCAGATTTTGTATGTGCCACCACCTGATTTCGAGGGTCGAATTGAGATACTTAATGTACACACACGAAGGATGCAATTAGGGAATGATGTTGATCTCAGAAGACTAGCAGAAGATACCGAGTTCTTCACGGGTGCTGAACTAGAGGGATTATGCAAAGAAGTTGGAATAGTAGCTCTAAGGGAAAACATGGAAGCCACTGTTGTTTTTGACCGTCATTTTCAGATTGTGAAGAATTCTTTAAAACCAGCATTAACAGCTGATGTCATTGATTCATACTCGTCTTTTAGAAGAACCTCATCTCGAGTTTTGCCTAAGATTGACCAAGAACATATAGATAGTTGA 1680 0.4298 MPGEMKSMSTRQWRAEEVIGGNTEAIQTLRDLITFPWRLLPCDAKRLGVKFGRGVLLHGSPGTGKTSLVRAVVEECGAILTIISPNTIHSAHVGESERNLREAFLEASSHAASGKSSVIFIDEIDVLCPRRDSKRLIASQLRFLMDSNKATSSTPGVVVVASTNRVDAIDPALRRNGRFDVEIEVSVPNEKERLQILELYTKKIPRDSCDLEFIAASCNGYVGADLEALCRKAIESAIKRSKNANKDINDSSLTLKDWKNARSLVQPSITRGITVEVPKVTWKDIGGLKDVKTKLEKAIEWPIKYPDAFSRLGITPVRGILLHGPPGCSKTTLAKAAANAANVPFFSLSGAELFSMYVGEGESLLREIFRKARIAGKSIIFFDEADVVAGKRGDSSSGSAAVGERLLSTLLTEMDGLEEAKGVLVLAATNRPYAIDAALMRPGRFDQILYVPPPDFEGRIEILNVHTRRMQLGNDVDLRRLAEDTEFFTGAELEGLCKEVGIVALRENMEATVVFDRHFQIVKNSLKPALTADVIDSYSSFRRTSSRVLPKIDQEHIDS 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi34g00056 559 Gene3D - 270 454 IPR027417 -
Vivi34g00056 559 Gene3D - 4 188 IPR027417 -
Vivi34g00056 559 FunFam ATPase family, AAA domain-containing 2 13 192 - -
Vivi34g00056 559 PANTHER AAA-FAMILY ATPASE 17 545 - -
Vivi34g00056 559 Pfam AAA+ lid domain 210 244 IPR041569 -
Vivi34g00056 559 Pfam AAA+ lid domain 475 519 IPR041569 -
Vivi34g00056 559 SMART AAA_5 316 455 IPR003593 GO:0016887
Vivi34g00056 559 SMART AAA_5 51 189 IPR003593 GO:0016887
Vivi34g00056 559 ProSitePatterns AAA-protein family signature. 423 441 IPR003960 GO:0005524|GO:0016887
Vivi34g00056 559 Pfam ATPase family associated with various cellular activities (AAA) 320 452 IPR003959 GO:0005524|GO:0016887
Vivi34g00056 559 Pfam ATPase family associated with various cellular activities (AAA) 55 186 IPR003959 GO:0005524|GO:0016887
Vivi34g00056 559 FunFam spermatogenesis-associated protein 5-like protein 1 454 540 - -
Vivi34g00056 559 FunFam Cell division control protein 48-B-like protein 270 454 - -
Vivi34g00056 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 519 IPR027417 -
Vivi34g00056 559 Gene3D - 455 554 - -
Vivi34g00056 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 265 IPR027417 -
Vivi34g00056 559 Gene3D - 189 269 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi34g00056 252 528 Calmodulin-binding Proteins AT3G56690 46.209 1.95e-80 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi34g00056 - - vra:106755317 774.237