Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi34g00053 ATGAGAGAAGACGAATCAAATTGGTTTTCACGATGGGAAGAACAACTGCCTCCACCGGAAGAACTCATGCCGTTATCACAAACCCTAATCACCCCTGATCTAGCTATGGCTTTCGATATCAGAAACCCTCACACCACAAACACCAACACTCTCAACGCTAATCCGCAACACCAACAGTCTCATCAAAATCAACATCAACAACAGCAACATCAACCTTCTTCTCTTCCTTCCTCGACCGAGTTCGCCGATTCCGGCGAACTCGGTTCGGGGACGGCCGGTGAAGAACCGGCCAGAACACTCAAAAGACCGCGGCTCGTTTGGACACCGCAACTTCATAAACGTTTTGTTGACGCTGTGGCCCACCTCGGAATTAAGAACGCTGTTCCGAAGACGATAATGCAGCTTATGAGTGTTGATGGGTTAACGAGAGAAAACGTGGCGAGTCACTTGCAGAAATATAGGCTTTATCTTAAACGCATGCAGGGGATTTCCTCCGCCGGTGGCGGTGGTTCCGGTGGGGGGTCTGTTGGAGTCAATGACCCTGCCACGGATCATCTGTTTGCTAGCTCGCCTGTGCCGCCGCATTTTCTTCATCCGGTTGCTCGGCCGAATTCTGATCAGTATATGCCTTTTGTTCCTGTACCTGTACCTGGCATTCACCATCAGCATCAGCATCAGCAGCACCTGGCGGCTGCTCAGTATCATCGGCCGGTCGGACATTTTGGGTCGCCGCCGAATGGGCACTTTGACAATCCGTTCTTGTCTAGACAGCAACATCAACAACATCAACAGCAACACCAACACCAGCAGCAGCTTCATAGGATTGGGGCACAATTGCATCACAATCCTGTTGGTGGTTATGTCGAGGATATGGAATCGGGGAATGCGTCGGGAGGGAGAAAGGTTCTTACTTTGTTTCCAACCGGAGATGATTGA 936 0.5064 MREDESNWFSRWEEQLPPPEELMPLSQTLITPDLAMAFDIRNPHTTNTNTLNANPQHQQSHQNQHQQQQHQPSSLPSSTEFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISSAGGGGSGGGSVGVNDPATDHLFASSPVPPHFLHPVARPNSDQYMPFVPVPVPGIHHQHQHQQHLAAAQYHRPVGHFGSPPNGHFDNPFLSRQQHQQHQQQHQHQQQLHRIGAQLHHNPVGGYVEDMESGNASGGRKVLTLFPTGDD 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi34g00053 311 Gene3D - 99 161 - -
Vivi34g00053 311 FunFam Two-component response regulator 98 161 - -
Vivi34g00053 311 MobiDBLite consensus disorder prediction 43 85 - -
Vivi34g00053 311 MobiDBLite consensus disorder prediction 1 22 - -
Vivi34g00053 311 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 2 292 IPR044841 GO:0003700|GO:0006355
Vivi34g00053 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 158 IPR017930 -
Vivi34g00053 311 MobiDBLite consensus disorder prediction 291 311 - -
Vivi34g00053 311 NCBIfam myb-like DNA-binding domain, SHAQKYF class 103 155 IPR006447 GO:0003677
Vivi34g00053 311 MobiDBLite consensus disorder prediction 43 101 - -
Vivi34g00053 311 SUPERFAMILY Homeodomain-like 99 159 IPR009057 -
Vivi34g00053 311 MobiDBLite consensus disorder prediction 238 273 - -
Vivi34g00053 311 MobiDBLite consensus disorder prediction 250 273 - -
Vivi34g00053 311 Pfam Myb-like DNA-binding domain 106 154 IPR001005 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi34g00053 1 311 G2-like Transcription Factor Family AT3G10760 54.986 8.93e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi34g00053 Myb_DNA-binding 2.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi34g00053 - - gmx:100797237 409.838