Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi34g00044 ATGAAGTCTGGGTCACTTGATCAGTGGAGGAGTTACTTTAGGTCGTCGAGTTCGGATATTTTCGATATAATTGACCATGCGATTGTTGTTGCTGCTGCTGATTGTCCGAAGGAGTTTAAGTTGAGGAGAGATGGGATTGCTGAGAGGTTGTTTTCTGTCATGCTGAATCGTTGCAAGGACTGTGAGAAAGTTGAAACGCCGGTTTCTGGTAATGAGAATGATGAGGTTTGCAAGAGAGGTTTTGTTAGAAATGGTGGGAGTAAGGAGAGTAAGGCAAATTGCGGTGGGGAAGATAATGGAGTTGTGGAAGTGAATCCTGTTAGCAATTACACCTTTGGAGATGCGGAGGCTCTCACGGATGAGCTCGAAGCAGAATCTGAGTTTCTTGCTGAGGTTTTGAGGATCAAAGGTGTTCTCGATAACTATGAAGATGAGTCTGACTCGGTGCTGTTTGAGTCTCTGAGGAGGCTTCAACTGATGCATATCTCCGTCGATCTTCTTAAGTCAACTGAGATTGGAAAAGCTGTCAATCCTCTCCGAAAGTATGGATCAAAGGATGTCCGTCAACTCGCACGGGTCCTCATCGATGGGTGGAAAGAAATGGTCGATAATTGGGTCAAGGGGAACACAGCAAAACCTGCTGCAGAAGGAGGCACACCGGATTCCATAAATCCGTCTGTTGTTGAGAATGCAGAAGATGAGGAGGAAGGAGGACTTCCATCACCTCCTTTAGACGACGGGGCTTTCTTTGTTTCTCAACCCGGTGCAATGGAGCTCTCACAGTTCTTCGATGGCATGGATGATGACGGAAATCTTCGTAAGAGTGGACCTTCTAACAAGAACCGTGACAGCGGCAGAAAGCCGGCTTCGGACACTCTAGTTAAGGACAAGAGGAATTTCCCGGTTTTCAACGCAACCGCAATCCCTGCCAATGACAACAAGAGTCAGCAAATGAAGAAGACTGAGGCTGCAGTGAGGCTGAACAAACCGGTAGCTGCTGATGCTGGCCGCGGAAGACCAATGAACTCGAACATTCAGCGGAAACCTAATGCAGAGCAGAGGCCGCAGCAGAAAGCCCAGAACGGTACTGTGCCAAAGAGGCCTCTCAATGCACCGCAAGAGAAGCCCAAATGCTTAAGTGATGCTGATAAGCTCGAAGCTACTAAGCGGAAACTTCAAGAGCGTTATCAACAAGCTGAAAACGCCAAGAGGCAAAGGACTATACAAGTTATGGAAATCAATGAACTTCCAAAGCAAGGAGCTGGCCAGCGAAACACTAATTTCAAACCGGGAAATCACAACCGGCAATGGGCTAATAACGGTCGTAGATAG 1332 0.4745 MKSGSLDQWRSYFRSSSSDIFDIIDHAIVVAAADCPKEFKLRRDGIAERLFSVMLNRCKDCEKVETPVSGNENDEVCKRGFVRNGGSKESKANCGGEDNGVVEVNPVSNYTFGDAEALTDELEAESEFLAEVLRIKGVLDNYEDESDSVLFESLRRLQLMHISVDLLKSTEIGKAVNPLRKYGSKDVRQLARVLIDGWKEMVDNWVKGNTAKPAAEGGTPDSINPSVVENAEDEEEGGLPSPPLDDGAFFVSQPGAMELSQFFDGMDDDGNLRKSGPSNKNRDSGRKPASDTLVKDKRNFPVFNATAIPANDNKSQQMKKTEAAVRLNKPVAADAGRGRPMNSNIQRKPNAEQRPQQKAQNGTVPKRPLNAPQEKPKCLSDADKLEATKRKLQERYQQAENAKRQRTIQVMEINELPKQGAGQRNTNFKPGNHNRQWANNGRR 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi34g00044 443 Coils Coil 382 409 - -
Vivi34g00044 443 MobiDBLite consensus disorder prediction 267 294 - -
Vivi34g00044 443 SMART TFS2_5 129 204 IPR003617 GO:0005634
Vivi34g00044 443 MobiDBLite consensus disorder prediction 414 443 - -
Vivi34g00044 443 ProSiteProfiles TFIIS N-terminal domain profile. 130 205 IPR017923 -
Vivi34g00044 443 CDD TFIIS_I 130 203 - -
Vivi34g00044 443 MobiDBLite consensus disorder prediction 329 382 - -
Vivi34g00044 443 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 122 216 IPR035441 -
Vivi34g00044 443 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 430 IPR044805 -
Vivi34g00044 443 MobiDBLite consensus disorder prediction 419 443 - -
Vivi34g00044 443 MobiDBLite consensus disorder prediction 343 367 - -
Vivi34g00044 443 MobiDBLite consensus disorder prediction 209 298 - -
Vivi34g00044 443 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 129 213 IPR035441 -
Vivi34g00044 443 Pfam TFIIS helical bundle-like domain 154 202 IPR017923 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vivi34g00044 Med26 3.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi34g00044 - - gmx:100799367 488.804