Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi34g00042 ATGGAACCCTTTTCCCAATCCGAAACCGACACCTACCTGGCCGGCTTCGTCATGGCCAACATCGTCGGCATAAAGCACTACTCCGGCACAATAACCGGCCGCGAAATGGTCGGCCTACTCCGGGAGCCTCTCAACCCATACGACTCAAACGCCATCAAAGTTCAAAACACTCAATCCCTCCAAGTCGGTTACATCGAACGCTCCGTTGCCGCCGTTCTTTCGCCGCTCATCGACGCTTCACTCATCCACGTTGAAGCCATCGTTCAAACTAACCCTCGCAACAACAATAACAGTAAATTTCGTATCCCTTGCCAGATTCATGTTTTCGCTCATTTCTCTGCTTTTGATGTTGTTCATGACGCTTTTAACGATTCACCTGTTCACTTCATTTCGCACTCTGATCCTTCTTTTACTTTATCCAACGCCGCCGCCGTTAAAGAAACCCGCGCCGAATCCACCACCACAAAAACCACCAGTAATAAAAACCTAGACCAAGTTTTCAAACTCGTCCGTGAAAACCTAGCTTCCAAAAACCAAATTCATGAACCGTTAAACCCTCCTTCTAACATAATCAAATCAGAGCTTCTTCAGCATCAAAAAGAAGCTCTGGGATGGCTTTTCCACCGTGAAAGTTCCGAGGATTTACCGCAGTTTTGGGAAGAGAAGGAGGGGAGTTTCGTCAATGTGTTGACGAATTACCAAACCAACACTAAACCGGAGCCGCTCCGGGGAGGGATATTCGCGGATGGTATGGGATTAGGGAAGACTTTAACTTTGCTTTCGTTGATTGCTTATGATAAGATGAAAATGAAAGGTGGGAAGAAAAGAGGGAGGAGTGTTGTAGAGACAAATGCTACATTGATTGTGTGTCCTCCTTCGGTTATTTCGACTTGGATAACTCAATTGGAAGAGCATACTAACCGTGGCGCGTTGAAGGTTTATATGTATTATGGTGATAGAAGGACTCAAGATGCTGAAGAACTGCGAAAATATGATGTTGTGTTGACTACTTATGCTACTTTGGGAGCTGAGTTGCGGTCGCTGGATACTGCAGTGAAGAAATTGGGGTGGAGGAGAATTGTTTTGGATGAAGCACATATGATTAAGAATGTTAATGCTGCACAGAGTCAGGCTGTTATTGCTTTGAATGCTAAGAGGAGATGGGCTGTTACTGGAACACCTATTCAGAATGGTTCTTATGATTTGTTTTCTCTTATGGCTTTTTTGCATTTTGAGCCTTTTTCAATCAAGAGTTATTGGCAAAGCTTGGTTCAACGTCCTCTTAATCAAGGCAAACAGACTGGGCTCAACCGATTGCAGGTTTTGATGGCGGCAATATCATTACGAAGAACAAAAGACACTGCATTGGTGGGGCTTCCACCTAAGATTGTAGAGACTTGTTATGTTGAACTTTCATGCGAAGAGCGTAAACTCTATGATGAGGTTAAAGATGAAATAAGGTCGCTTATGAACAATGACAGACTAATGTATAGTTATTCTACTATACTAAGTATGATTCTAAGACTTCGTCAGATCTGTGCTGATTTATCGATGTGCCCTTCGGATTTCAAGGCATGTCTATTTTCTTCAACTGAAATTGAAGATGTTTCAGAGAACCCTGAATTGCTGCAAACATTAATTGGGATGCTACAAGATTGTGAAGATTTTGACTGTCCAATTTGTTTATCTCCCCCATCAGATGTTGTAATTACATGTTGTGCTCATATTTTCTGCCGAGAATGTATTCTGAAAACTCTACAGCGCAGCAACTCTAGCTGTCCACTTTGTCGTCGCTCCCTTTCAGAATCTGAACTATTCTCAGTTCCCTCTCTCAAGACTGATACTACTGAACCGAGTCCACCAGATGTAAGGTCATCCACAAAAGTCTCTACTTTGATAAAGCTTCTTACAGAATCAAGGGATCAAAATCCAGCTACCAAATCTGTTGTATTTTCACAATTCCGAAAGATGCTGCCATTGTTAGAAGAATCTCTGAAAGCTGCCGGCTTTAAAACACTGCGTCTTGATGGGGCAATGAGTGCTAAACAAAGGACTCAAGTTATCGAACAATTTCAACTCTCAGAAGTTGATGAGCCAATGATTCTCCTTGCAAGTCTAAGGGCTTCAAGTACAGGTATAAATCTAACGGCTGCCTCTAGAGTGTACTTAATGGAGCCGTGGTGGAACCCAGCAGTCGAAGAACAGGCAATGGATCGTGTCCACCGCATTGGACAGAAAGAAGAGGTGAAGATTGTTAGACTGATAGCTAAAAATAGCGTTGAAGAGAAAATTTTAATGTTGCAAGAGGAAAAGAAAGAAATAACTAGCCGGGGATCTGGGAGGAGATCAAAGGATGTTGTTGGTATGGGCATAGAGGATCTCCGTTTTGTTTTAGGAGAATAG 2403 0.4286 MEPFSQSETDTYLAGFVMANIVGIKHYSGTITGREMVGLLREPLNPYDSNAIKVQNTQSLQVGYIERSVAAVLSPLIDASLIHVEAIVQTNPRNNNNSKFRIPCQIHVFAHFSAFDVVHDAFNDSPVHFISHSDPSFTLSNAAAVKETRAESTTTKTTSNKNLDQVFKLVRENLASKNQIHEPLNPPSNIIKSELLQHQKEALGWLFHRESSEDLPQFWEEKEGSFVNVLTNYQTNTKPEPLRGGIFADGMGLGKTLTLLSLIAYDKMKMKGGKKRGRSVVETNATLIVCPPSVISTWITQLEEHTNRGALKVYMYYGDRRTQDAEELRKYDVVLTTYATLGAELRSLDTAVKKLGWRRIVLDEAHMIKNVNAAQSQAVIALNAKRRWAVTGTPIQNGSYDLFSLMAFLHFEPFSIKSYWQSLVQRPLNQGKQTGLNRLQVLMAAISLRRTKDTALVGLPPKIVETCYVELSCEERKLYDEVKDEIRSLMNNDRLMYSYSTILSMILRLRQICADLSMCPSDFKACLFSSTEIEDVSENPELLQTLIGMLQDCEDFDCPICLSPPSDVVITCCAHIFCRECILKTLQRSNSSCPLCRRSLSESELFSVPSLKTDTTEPSPPDVRSSTKVSTLIKLLTESRDQNPATKSVVFSQFRKMLPLLEESLKAAGFKTLRLDGAMSAKQRTQVIEQFQLSEVDEPMILLASLRASSTGINLTAASRVYLMEPWWNPAVEEQAMDRVHRIGQKEEVKIVRLIAKNSVEEKILMLQEEKKEITSRGSGRRSKDVVGMGIEDLRFVLGE 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi34g00042 800 ProSiteProfiles Zinc finger RING-type profile. 558 597 IPR001841 -
Vivi34g00042 800 SMART Ubox_2 555 618 IPR003613 GO:0004842|GO:0016567
Vivi34g00042 800 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 631 795 IPR001650 -
Vivi34g00042 800 SMART HIRAN_2 14 112 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vivi34g00042 800 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 236 412 IPR014001 -
Vivi34g00042 800 Pfam Zinc finger, C3HC4 type (RING finger) 555 601 - -
Vivi34g00042 800 Gene3D - 227 451 IPR038718 -
Vivi34g00042 800 SMART ring_2 558 596 IPR001841 -
Vivi34g00042 800 SMART ultradead3 191 419 IPR014001 -
Vivi34g00042 800 Coils Coil 757 777 - -
Vivi34g00042 800 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 547 608 IPR013083 -
Vivi34g00042 800 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 450 IPR027417 -
Vivi34g00042 800 Gene3D - 5 127 - -
Vivi34g00042 800 Pfam SNF2-related domain 198 518 IPR000330 GO:0005524|GO:0140658
Vivi34g00042 800 SMART helicmild6 659 744 IPR001650 -
Vivi34g00042 800 SUPERFAMILY RING/U-box 548 602 - -
Vivi34g00042 800 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 451 798 IPR027417 -
Vivi34g00042 800 CDD RING-HC_HLTF 554 605 - -
Vivi34g00042 800 ProSitePatterns Zinc finger RING-type signature. 573 582 IPR017907 -
Vivi34g00042 800 Gene3D - 460 790 IPR027417 -
Vivi34g00042 800 Pfam Helicase conserved C-terminal domain 628 744 IPR001650 -
Vivi34g00042 800 CDD SF2_C_SNF 626 755 - -
Vivi34g00042 800 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 125 797 - -
Vivi34g00042 800 Pfam HIRAN domain 17 105 IPR014905 GO:0003676|GO:0008270|GO:0016818
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi34g00042 1 794 RAD5 or RAD16-like Gene Family AT5G05130 57.515 0.0 949
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi34g00042 SNF2_N 7.3e-77 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi34g00042 K15711 - fve:101311093 959.518