Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi34g00029 ATGCTTCACCAAAATATTGCAATGGAAAACAACTCTGAACTCTTTCAATTCATTGTTGCTAACAACCCTTCATTCTTTGACTATTCAAGTACTCCTATGATGCAACAAAGTTTATGTAGCTCTTCTGATAACAACAACAATAGCTATTATCACCCTTTTGAAGTTTCTGAAATTACTGATACACCCTCCTCCCAACAAGATAGAGCTCTTGCTGCTTTGAAGAATCATAAGGAAGCTGAGAAGAGAAGGAGAGAGAGAATCAATTCTCACCTTGATCATCTTCGTACTCTTCTCCCTTGCAATTCAAAGACGGACAAAGCTTCACTTCTAGCAAAAGTTGTGGAGAGAGTGAAAGAGTTAAAGCAGCAAACATCTCAGATCACAGAACTCGAAACAGTTCCATCCGAAACCGACGAAATAACGGTAATCTCCGCAGGCGGCGACTTCACCGGAGACGGAAGACTAATATTCAAAGCATCATTATGCTGCGAGGATCGGTCAGACTTAATCCCGGAGCTAATAGAAATCCTGAAATCTCTGCGGCTAAAAACAGTGAAAGCTGAAATTTGCACACTGGGAGGAAGAACTCGGAACGTTCTTGTTGTTGCTGGTGATAAAGAAGATAGTAGCATTGAATCGATACATTTTCTTCAGAACTCGCTTAGGTCATTGTTGGATAGGTCAAGTAGTTGTAATGATAGGTCGAAACGGCGTCGTGGGATGGATAGAAGAATGATGCCTTAA 744 0.4099 MLHQNIAMENNSELFQFIVANNPSFFDYSSTPMMQQSLCSSSDNNNNSYYHPFEVSEITDTPSSQQDRALAALKNHKEAEKRRRERINSHLDHLRTLLPCNSKTDKASLLAKVVERVKELKQQTSQITELETVPSETDEITVISAGGDFTGDGRLIFKASLCCEDRSDLIPELIEILKSLRLKTVKAEICTLGGRTRNVLVVAGDKEDSSIESIHFLQNSLRSLLDRSSSCNDRSKRRRGMDRRMMP 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi34g00029 247 MobiDBLite consensus disorder prediction 229 247 - -
Vivi34g00029 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 120 IPR011598 GO:0046983
Vivi34g00029 247 Gene3D - 66 132 IPR036638 GO:0046983
Vivi34g00029 247 MobiDBLite consensus disorder prediction 228 247 - -
Vivi34g00029 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 128 IPR036638 GO:0046983
Vivi34g00029 247 Pfam Helix-loop-helix DNA-binding domain 75 120 IPR011598 GO:0046983
Vivi34g00029 247 CDD bHLH_AtAIG1_like 66 144 - -
Vivi34g00029 247 SMART finulus 77 126 IPR011598 GO:0046983
Vivi34g00029 247 FunFam transcription factor bHLH30 66 129 - -
Vivi34g00029 247 PANTHER TRANSCRIPTION FACTOR BHLH30 39 240 IPR045847 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi34g00029 14 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 59.276 3.87e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi34g00029 HLH 6.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi34g00029 - - gmx:100802566 295.049