Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi34g00024 ATGCCTTACCAAGTCCGCTCGAATCTCTTCATCAGCAACATCAACGACGCAGCTCAGATTCTCCAAAACGCCGCCGTTCAACACAACATCACCCACATCCTTTCCGTTCTCAGCTCCGCTTCAATCTCCTTCTTCTCCGAATGGCGTTCCAACATCTCCATCCCCGTCAAAGAGATTTCCAAACTTCACGTCTCCGACCTCCCTTCCGCCGCCAAGTCCGCCCTCTCGCCGGACAAACTCCTCTACTCACTCGAGTACGCCGGTAAAGATTTCAAGCTTGTAAGGATGGCGGTTCCTCTTAAGGATACTGAGAGCGAGAATTTGTTGGATTACCTTGAGGTTTGCATCGATTTCATTGATCGGAGTAGGAAGGAAGGTTCTGTATTAGTTCACTGTTTTGCAGGTGTTTCTAGAAGTGCATCGGTTATTACTGCTTATTTGATGAGAAGCGAGAATCTGTCACTAGAAGATGCCCTTGAATCATTAAAGCAGAGCTGTGAATTTGTTTGCCCCAATGATGGTTTTCTAGAGCAGTTGAAAATGTTTGAGGAGATGGGTTTCAAGGTTGATCATTCTAGCCCTGTATACAAGCGCTTTCGTCTAAAAGTACTAGGTGAGAATCATTTTGCAGGGTCAAGGATAGACAGTTCTAAACTTGGTGCAGATCCTGGCATGCCTGTTGAAACATCTTCAGAGCCACCAGAAGCTACTAAAGTAGATAATAACCATAGCCCTACATTCCGTTGTAAGAAGTGCCGTCGGATTGTTGCATTGCAAGAACATGTTATAGATCATATTCCTGGTGAGGGTGAGACATCCTTTGATTGGCACAAGCGAAGAAGTGGCAATCCTTTTAACAAATCTAATGAGTCTGAGTGTTCGTCCATATTTATTGAGCCTCTACGATGGATGAAAGATGTCGAGGAAGGCGCGTTGGAGGGAAAGCTGTCCTGCACTCATTGTGATGCCCGTTTGGGATACTTTAATTGGTCAGGCATACAATGCAGCTGTGGAAGCTGGATAACCCCAGCTTTCCAACTTCACCAAAGTCGGGTAGATATAAGCCCTGTGTAA 1074 0.4562 MPYQVRSNLFISNINDAAQILQNAAVQHNITHILSVLSSASISFFSEWRSNISIPVKEISKLHVSDLPSAAKSALSPDKLLYSLEYAGKDFKLVRMAVPLKDTESENLLDYLEVCIDFIDRSRKEGSVLVHCFAGVSRSASVITAYLMRSENLSLEDALESLKQSCEFVCPNDGFLEQLKMFEEMGFKVDHSSPVYKRFRLKVLGENHFAGSRIDSSKLGADPGMPVETSSEPPEATKVDNNHSPTFRCKKCRRIVALQEHVIDHIPGEGETSFDWHKRRSGNPFNKSNESECSSIFIEPLRWMKDVEEGALEGKLSCTHCDARLGYFNWSGIQCSCGSWITPAFQLHQSRVDISPV 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi34g00024 357 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 188 IPR020422 GO:0006470|GO:0008138
Vivi34g00024 357 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 109 164 IPR000387 GO:0016311|GO:0016791
Vivi34g00024 357 FunFam Dual specificity protein phosphatase 12-like 4 205 - -
Vivi34g00024 357 MobiDBLite consensus disorder prediction 218 242 - -
Vivi34g00024 357 Pfam Dual specificity phosphatase, catalytic domain 93 184 IPR000340 GO:0008138|GO:0016311
Vivi34g00024 357 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 4 188 IPR029021 -
Vivi34g00024 357 ProSitePatterns Tyrosine specific protein phosphatases active site. 130 140 IPR016130 GO:0016311|GO:0016791
Vivi34g00024 357 SMART dsp_5 1 185 IPR020422 GO:0006470|GO:0008138
Vivi34g00024 357 Gene3D Protein tyrosine phosphatase superfamily 3 205 IPR029021 -
Vivi34g00024 357 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 353 - -
Vivi34g00024 357 CDD DSP_DUSP12 4 190 - -
Vivi34g00024 357 PIRSF DUSP12 2 53 IPR016278 GO:0006470|GO:0008138
Vivi34g00024 357 PIRSF DUSP12 81 357 IPR016278 GO:0006470|GO:0008138
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi34g00024 93 184 Protein tyrosine phosphatase (PTP) family AT3G06110 35.484 3.69e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi34g00024 K14819 - gmx:100776877 592.038